Cucurbita pepo subsp. pepo (vegetable marrow): 111791427
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Entry
111791427 CDS
T05351
Name
(RefSeq) lys-63-specific deubiquitinase BRCC36-like isoform X1
KO
K11864
BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
111791427
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
cpep01002
]
111791427
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cpep04121
]
111791427
03036 Chromosome and associated proteins [BR:
cpep03036
]
111791427
03400 DNA repair and recombination proteins [BR:
cpep03400
]
111791427
Peptidases and inhibitors [BR:
cpep01002
]
Metallo peptidases
Family M67
111791427
Ubiquitin system [BR:
cpep04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
111791427
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
111791427
BRISC complex
111791427
Chromosome and associated proteins [BR:
cpep03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
BRISC complex
111791427
DNA repair and recombination proteins [BR:
cpep03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
111791427
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCC36_C
JAB
Prok-JAB
UPF0172
Motif
Other DBs
NCBI-GeneID:
111791427
NCBI-ProteinID:
XP_023528524
LinkDB
All DBs
Position
LG03:9260833..9266177
Genome browser
AA seq
487 aa
AA seq
DB search
MHDRIVLLLDLLLKVRIIGSDFVESWKSFGNSLFLHSFSTESFRIHRNGDRKMSLTSVKM
SEDVWFTCLTHALSTETEEIMGLLLGDIEHSENGSVTALIWGASPQTRSDRRKDRVETHP
EQLAAASAQAERMTAMTGRTTRVIGWYHSHPHITVLPSHVDVRTQGTYQLLDSGFIGLIF
SCFSEDANKVGRIQVIAFQSSDGKQNHQSRPISLSPVYRNSVIDVESSLSSSENVSANVG
YGPRESPEQDTGDSMIAGTLKGTGRSSELGYFFANADTNYQGKEKIGGSYLTKNANSGIT
DIDPMDLSESMQEAMHRSNIEMSAATFSRKEIPLHVMPTASLIKLDSPLMSFTDLQQVLF
EEERSAYNQAVSYNMKDGKVHPLTFIHHTSTYQASMCKLIEYCVSPVISALQDRAKENEI
RLALLAEEARNLEVEAAKANESVPGSPHQVHGSRASASTTPRDLYPSTASVGARSAGSSI
HQSRKGL
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgcacgatcgtatagtattgctgctcgatctgctgctcaaggtccgaatcatcggcagt
gactttgttgaaagttggaaatccttcggaaactctcttttccttcattcattttctaca
gagagtttccgaattcatagaaacggtgatcgaaaaatgtctctgacgagcgttaagatg
tccgaagatgtttggtttacttgcctcactcatgcattgtccacggagactgaagaaatc
atgggacttctccttggcgatattgagcattcagaaaatggtagtgtaactgcactaatt
tggggagcatcgcctcagacgcggtctgacagaaggaaggaccgcgtggagactcatcct
gaacaattggctgctgcatcagcccaggctgagagaatgacagcaatgactgggagaaca
acaagagttattgggtggtaccattcacatcctcatattacagtgcttccttcacatgtt
gatgttcgaactcaggggacatatcagctccttgattctgggtttattgggctgatattt
tcctgctttagtgaagatgcaaataaggttggaagaattcaagttattgcttttcagtcc
tcggatgggaagcaaaatcaccaatcaagacctatttctttgtctcctgtatatcgaaat
tcagtgattgatgttgaatcttcattgagttcctctgaaaacgtatcagcaaatgtgggc
tatggaccaagggagagtcctgaacaggatactggtgattcaatgattgccggaactctt
aagggaactggacgatcttcggagttgggttatttctttgctaatgccgacaccaactat
caaggaaaagagaaaatcggaggaagctatcttactaagaatgcaaacagcggaattact
gatatcgatccaatggacttgtctgaaagtatgcaagaagcaatgcaccgctcaaatatt
gaaatgagtgctgccacattctcaaggaaggagattcctcttcatgttatgccaactgcc
tcgctcataaagcttgattcaccattaatgtcttttacagatttacagcaggttctgttt
gaagaggagagatcagcttataaccaagccgtctcgtataatatgaaggatgggaaagtg
catccgctgacattcatacatcacacatcaacatatcaggcttcaatgtgcaagttgatt
gaatattgtgttagtcccgtcataagtgcgcttcaggaccgcgcaaaagagaatgaaatt
cggttagctttgctggctgaggaagccaggaatttggaagttgaggctgcaaaagcaaac
gagtcagtcccaggatcacctcaccaagttcatggatctcgagcaagtgcttcgacaaca
cccagggacttatatccttcaactgcatctgttggtgcacgaagtgcaggaagctctatt
caccagagtagaaaggggttgtga
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