Cucurbita pepo subsp. pepo (vegetable marrow): 111791459
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Entry
111791459 CDS
T05351
Name
(RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 2
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111791459
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111791459
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
111791459
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GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Motif
Other DBs
NCBI-GeneID:
111791459
NCBI-ProteinID:
XP_023528578
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Position
LG03:13046239..13051713
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AA seq
200 aa
AA seq
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MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN
HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVATWW
RPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
PVISTIPQQLSRFQFNMITT
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
atggtgacgtcgccggtggtgaacacctatccactttccagctacactttcggtaccaaa
gagccgaagctcgagaaggacacctccgtcgccgatcgtcttgctcgcatgaaagtcaac
tatatgaaggaaggcatgaggacaagtgttgaagcaattctgctggtgcaagaacataac
catccccatattctacttctgcaaataggcaataccttttgcaagctccctgggggccgg
ttgaagccaggagaaaatgaaattgaaggtttaaagaggaagctgacgagcaaactgggt
gcaaattcacccgctctccagcctgattggcagattggtgaatgtgtggctacttggtgg
agaccaaactttgaaactgttatgtatccttactgcccccctcatattactaaagccaag
gaatgcaaaaagctcttcattgttcacttgtctgaaagagagtacttcgcagttcctaaa
aatttgaagctgcttgcagttcctttgtttgagctctacgacaacgtgcagagatacgga
cctgttatatcgacgattccgcagcagctttccaggttccagttcaacatgatcaccaca
tga
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