Cucurbita pepo subsp. pepo (vegetable marrow): 111791737
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Entry
111791737 CDS
T05351
Name
(RefSeq) probable polyribonucleotide nucleotidyltransferase 1, chloroplastic
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111791737
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111791737
03016 Transfer RNA biogenesis [BR:
cpep03016
]
111791737
Enzymes [BR:
cpep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
111791737
Messenger RNA biogenesis [BR:
cpep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
111791737
Transfer RNA biogenesis [BR:
cpep03016
]
Prokaryotic type
tRNA degradation factors
111791737
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
Motif
Other DBs
NCBI-GeneID:
111791737
NCBI-ProteinID:
XP_023528975
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All DBs
Position
LG03:2718977..2733759
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AA seq
923 aa
AA seq
DB search
MLANTCGLHFRPCYSHAAEFSHSGTCQISLSSYCPRFHAFTKPKLSSLSLLRSKKNGKSL
VTRALTNSAEPDSVAASDGIPSSLRPFSVKIPVGDRHILVETGHMGRQASGAVTVTDGET
IVYTSVCLADIPSEPSDFFPLFVNYQERFSAAGRTSGGFFKREGRARDHEVLICRLIDRP
LRPTMPKGFYHETQILSWVLSYDGLHTPDCLAITAAGIAVALSEVPNSKAVAGVRIGLVN
DKFIVNPTTKEMEDSELDLVLAGTDSAILMIEGYGNFLPEEMLLQAVEIGQNAVIAICKE
VDALVRERGKPKMLDAIKLPPPQLYEHVEEIAGKELEKVLQIKSKIPRRKALLSLEEKVI
SILTEEGYVSLDTTSEVLEPIPDLVEDEDEDDEVVVDGEVDEGDVHIKPTTRRPILTLFS
VVDVKLVFKEVTSNFLRRRIVEGGIRSDGRTPVEIRPINSRCGLLPRAHGSTLFTRGETQ
SLAVVTLGDKQMAQRVDNLVDADELKRFYLQYSFPPSCVGEVGRIGAPSRREIGHGTLAE
RALEPSLPAEDDFPYTIRVESTITESNGSSSMASVCGGSLALQDAGVPIKCPIAGIAMGL
VNDTKEFGGDGTPLILSDITGSEDASGDMDFKVAGNETGITAFQMDIKVGGITIPIMREA
LLQAKDGRKHILAEMLKSSPPPSKRLSQYAPLIHIMKVLPEKINLIIGSGGKKVKSIIEE
TRVEAIDTQDDGTVKITANDLSSLEKCKAIISNLTMVPTIGDIYRNCEIKTIAAYGVFVE
IAPGREGLCHISELSSDWLAKAEDAVKVGDKIDVKVIEVNEKGQLRLSRRALLPEADQDS
SSKDNTGNPSRNKAAMQKGPDKSTSKIAGKENMEQSNVQKGVVAASGSSSEDAAKLQKKF
IRKEATATKDRPINKEKTKSTSS
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgttagcgaacacttgcggcctccatttccgaccatgctattcccacgcagccgaattc
tctcattctgggacatgccaaatctctctatcttcctattgccctcgtttccatgctttc
accaaaccgaagctctcgtctctgtcgcttcttcgcagtaagaaaaatggtaagagtttg
gtcaccagggctcttacgaattctgcggaacctgactcggttgcggcgagcgatggaata
cccagttctttgcggcctttctctgtcaaaattcctgttggggatagacatattttggtc
gagacgggccatatggggagacaagctagtggtgctgttacagtaactgatggagaaact
attgtttatacatctgtttgtttggctgatataccaagcgagccttcggatttctttcca
ctttttgttaattatcaagaacgtttttctgcagcaggtcggactagcggaggattcttc
aaacgcgaaggaagagcaagagatcacgaggttctcatttgtagattgattgataggccc
ttgcgcccaactatgcccaaaggtttttaccatgaaacccagatattatcttgggttttg
agttatgatggtctgcacactcctgattgtttggcaattacagcagctggaatagcagtt
gcgctttcagaagttcctaattcaaaagcagttgctggagttcgaattggtcttgttaac
gacaagtttattgttaatccaactactaaagagatggaagactctgagcttgatttagta
cttgctggcactgatagtgcaatattgatgatagagggctatggtaattttctacctgaa
gagatgttgctccaagctgtagaaattgggcagaatgctgtaatagcaatttgcaaggag
gtggatgcattagtaagggagcgagggaaaccaaaaatgctcgatgccattaagcttcct
cctcctcagctctatgaacatgttgaagaaattgccggtaaagagttagaaaaagtcctg
caaattaaaagcaaaattccccgtagaaaggctctcttatcattagaagaaaaggttatt
tccatattgacagaagaaggttacgtcagtttagataccacttcagaagttctcgaacct
atacctgatttggtggaggatgaagatgaggatgatgaagtggtggtggatggtgaagtt
gatgaaggtgatgtccatattaaaccaactacacgccggcctatcttaacactcttttcc
gtggtagacgtaaagttagtatttaaagaagtgacatccaattttctcaggagacgcatt
gtggagggtggaataagaagtgatgggaggacaccagttgagatacgtccaattaactca
agatgtgggttacttcctcgggcacatggcagcacactattcactcgtggtgaaactcag
tcacttgcagtggttacgctcggggataagcaaatggcacaaagagtggacaaccttgtt
gatgcagatgagttgaaaaggttctaccttcagtactcttttcccccatcatgtgtcgga
gaggttgggcgtattggtgcacctagtcgaagggaaattggtcacggtacgcttgcagag
agagcacttgaaccatctttacctgctgaagatgattttccttacaccatacgtgttgag
agtacaatcactgaaagcaatggctcctcaagcatggcatccgtttgtgggggttcattg
gctctgcaggatgctggagttccaattaagtgtccaattgctggaatagcaatgggtttg
gttaatgatacaaaggaatttgggggagatggaactccacttattctgtctgacataaca
ggatccgaggatgcttctggagatatggatttcaaggtagctggtaatgaaacgggcata
acagcatttcagatggatataaaggtgggcggcattactatacccattatgagagaggcg
ctcctgcaagcaaaggatggccgtaagcatattcttgctgaaatgttgaagtcttctcct
cctccttcgaaaaggctttcacagtatgctccattgattcatatcatgaaggttctacct
gaaaaaataaacctaatcattggttctggcggaaaaaaggtgaagagcataatagaggaa
acacgagtcgaggctattgacactcaagacgatgggacagttaaaattactgcaaatgat
ttgtcaagcttggaaaaatgcaaagctattattagcaatctgacaatggttccaactatt
ggtgatatctataggaactgtgagatcaagacaattgctgcttacggtgtttttgttgag
atagcacctggacgagagggactttgccatattagtgagctgagctcagattggttggca
aaggcagaagatgctgttaaagttggagacaaaatcgatgtcaaagtcattgaggtaaat
gaaaagggtcagctccgccttagccgtcgagcattgcttccagaggctgaccaggattcc
agttcaaaggataacacaggcaacccctccagaaacaaggctgcaatgcagaagggccct
gataaaagtacctctaagatagctggtaaggagaacatggaacagagtaatgtgcagaaa
ggtgttgttgcagcaagtggtagttcatcggaggacgctgcaaaactgcagaagaagttc
atacggaaagaagcgactgcaacgaaagacagacctataaacaaagagaagacaaaaagc
acaagcagttga
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