KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111792109
Entry
111792109         CDS       T05351                                 
Name
(RefSeq) RNA-binding protein Y14-like
  KO
K12876  RNA-binding protein 8A
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03013  Nucleocytoplasmic transport
cpep03015  mRNA surveillance pathway
cpep03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111792109
  09122 Translation
   03013 Nucleocytoplasmic transport
    111792109
   03015 mRNA surveillance pathway
    111792109
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cpep03019]
    111792109
   03041 Spliceosome [BR:cpep03041]
    111792109
Messenger RNA biogenesis [BR:cpep03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     111792109
Spliceosome [BR:cpep03041]
 Complex C
  Other components
   EJC/TREX
    111792109
SSDB
Motif
Pfam: RRM_1 RRM_5 RRM_3
Other DBs
NCBI-GeneID: 111792109
NCBI-ProteinID: XP_023529212
LinkDB
Position
LG04
AA seq 197 aa
MASADVEAVDFEPEEDDLMDEDGAAEADVSPRAPFPKLKSAITGGASSTLAGGLKKTKGR
GFREDSDRNTRLAGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFGDFGE
IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSRGPIRRK
NTRPARERRSRSPRRRY
NT seq 594 nt   +upstreamnt  +downstreamnt
atggccagcgctgatgttgaggctgtcgactttgagcccgaggaagacgacctcatggac
gaggatggagccgccgaagccgatgtctccccacgagctccttttcctaagctcaaatcc
gccattactggtggcgcatcttccacgttggccggtggtttgaagaaaaccaagggtcgt
ggatttcgagaagattctgatcgtaacacccgtcttgctgggtcggacttcgattccctc
aactctgctgatggccctggcgtccaacgatctattgaaggatggatcattctggtatct
ggtgtacacgaagaggcacaggaggatgatctacaaaatgcatttggtgactttggggag
ataaagaatttgcatctaaatctcgatcgccgtactgggtttgtcaaggggtatgcgttg
atcgaatacgagagctttgaggaagcagagaaagcaatatctgccatggatggagctgaa
cttctgacccaaattatcaatgttgattgggcattcagccgtggacccatcagaagaaag
aacacaagacctgcacgagaacgacgttcgaggagcccaaggaggagatattga

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