Cucurbita pepo subsp. pepo (vegetable marrow): 111792143
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Entry
111792143 CDS
T05351
Name
(RefSeq) DDB1- and CUL4-associated factor 13-like
KO
K11806
DDB1- and CUL4-associated factor 13
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cpep03009
]
111792143
04121 Ubiquitin system [BR:
cpep04121
]
111792143
Ribosome biogenesis [BR:
cpep03009
]
Eukaryotic type
90S particles
Other 90S particles
111792143
Ubiquitin system [BR:
cpep04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
111792143
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Sof1
WDR55
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_EIPR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
NBCH_WD40
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_SCAP
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
eIF2A
Beta-prop_IFT122_1st
PROPPIN
Beta-prop_WDR19_1st
Beta-prop_NUP159_NUP214
Beta-prop_IP5PC_F
VID27
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
111792143
NCBI-ProteinID:
XP_023529241
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Position
LG04:complement(6979762..6984416)
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AA seq
451 aa
AA seq
DB search
MKVKVISRSTDEFTRERSQDLQRVFRNFDPNLRTQEKAVEYVRAINAAKLDRMFAKPFIG
AMDGHLDAVSCMAKNPNHLKGIFSGSMDGDIRLWDIANRRTVCQFPGHQGAVRGLTSSSD
GRILISCGTDCTVRLWNIPIPTLNSYETSNNSSEPLAVYVWKNAFWAVDHQWDGNLFATA
GAQLNIWDHNRSQPVSSFEWGTDSVISVRFNPGEPNVLATSASDRSITLYDLRMSSPVRK
IIMQTKTNSICWNPREPMNFTAANEDCNCYSYDSRRLDEAKCVHRDHVSAVMDIDFSPSG
REFVTGSYDRTIRIFPYNGGHSREIYHTKRMQRVFCVRFSCDASYVISGSDDTNLRLWKA
KASEQLGVLLPREKRKHEYQEAVKNRYKHLPEVKRIVRHRHLPKPIFKAAALRRTIVDAE
RKKAERRKAHSAPGSISTVPLRRRRIIKEVE
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtcaaggtaatatcccgctccactgatgaattcactcgagaacgaagccaagac
cttcagagggtatttcggaacttcgaccccaatctccgaacgcaagagaaggcggttgag
tatgttcgcgctattaatgccgcgaaattggacaggatgtttgcaaaaccatttatagga
gccatggatgggcatttagacgctgtttcatgtatggcgaagaatcctaatcatttgaaa
gggatattctccggttcgatggatggagatattcgcctatgggatattgctaacaggcga
acggtttgtcagtttcctggacatcaaggtgctgttcgaggcctgacttcatcttcagat
ggacgcatcttgatatcatgtgggacagattgcactgtcaggctatggaatatcccaatt
cccactctgaattcttatgagacttcaaacaattcatctgagcctctggcagtttatgtt
tggaagaatgctttctgggctgttgatcatcaatgggatggaaatctttttgccacggct
ggtgctcaactaaatatctgggatcacaacaggtctcaaccagtgagcagttttgagtgg
ggaacagactcagttatctctgttcgtttcaatcctggagaacccaatgtcctcgcaaca
tcagctagtgatcgaagcattacgttgtatgatttgcgcatgtcatcccccgtaaggaaa
ataattatgcagacgaagacaaattccatttgttggaatccaagggagccaatgaacttc
actgctgcaaatgaagactgcaactgttatagctacgattctaggagactagacgaggca
aaatgtgtgcacagagatcatgtatctgcagtaatggatattgatttttcaccgagtggt
cgagaatttgttactggctcatatgatagaacaataagaattttcccgtataatgggggt
cacagccgtgagatttatcataccaaaagaatgcaaagggtcttctgtgtcaggttcagc
tgtgatgcaagctatgtaatatcagggagtgacgacacgaaccttcggctttggaaggct
aaagcatctgaacaattaggagttcttcttccaagggagaagagaaagcatgaatatcaa
gaggctgttaagaatcgttataaacatcttcccgaggttaagcgtattgtcaggcatagg
catttacctaaaccaatattcaaagctgctgccctccgtcgcactattgtcgatgccgaa
cgaaagaaggctgagaggaggaaagctcacagcgctcctgggagcatttcaactgtacca
ctccgtagaagaagaattatcaaagaagttgagtaa
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