Cucurbita pepo subsp. pepo (vegetable marrow): 111792217
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Entry
111792217 CDS
T05351
Name
(RefSeq) SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
111792217
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpep03021
]
111792217
03036 Chromosome and associated proteins [BR:
cpep03036
]
111792217
Transcription machinery [BR:
cpep03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
111792217
Chromosome and associated proteins [BR:
cpep03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
111792217
PBAF complex
111792217
GBAF(ncBAF) complex
111792217
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
111792217
NCBI-ProteinID:
XP_023529329
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Position
LG04:complement(5521734..5526127)
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AA seq
552 aa
AA seq
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MSMNNMNNMNNNNPPKSLGLGGVSSSPFGNSGIIPPSMAANSSFPQPQAQSQLGAGFQTP
FQLTPAQALAQAQLKAHAQAQAQAAHAQFQAHLQAQGLSLTQSQGIGGGNMGSPLQGFST
PGLAGVKRIPQKPPVRPPILPPATPFSPLKTMELTPAARKKKQKLPEKQLQEKVAAILPE
SALYTQLLEFESRVDAALARKKVDIHEALKNPPCIQKTLRIYVFNTFANQVNTIPRKPNA
DPPTWTLKIIGRILEDGIDPDHPGVVQRSNPLYPKFSAFFKRVTISLDQRLYPDSHIIVW
ENARSPAPNEGFEVKRKGDKEFSVNIRLEMNYIPEKFKLSPALMEVLGIEVDTRPRIIAA
IWHYVKARKLQNPNDPSIFHCDQPLQKVFGEDKMKFTMVSQRISQHLFPPQPIHLEHKIK
LSGNSPVGTACYDVLVDVPFPIHRELSALLANAEKNKEIDACDEAICTAIRKIHEHRRRR
AFFLGFSQSPVEFIDALIDSQSKDLKLLAGEGSRNPEKERRSDFFHQPWVEDAVIRYINQ
KPTAGSDAPGST
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgtctatgaacaatatgaacaatatgaacaataataacccaccgaagagccttggcctt
ggaggggtttcttcgtcgccttttggaaattctgggataattccgccatctatggctgca
aattcctcatttccacagcctcaagctcaatctcaattaggagctgggtttcaaactcca
tttcagctaacccctgctcaggctttggcccaagctcagttgaaggctcatgcccaagct
caagcacaagcagctcacgctcagtttcaagctcatttacaagctcaagggctatcccta
actcagagccagggtattggtggtgggaacatgggttctcctttgcaggggttttccaca
cctggccttgcaggtgtgaagcgaattcctcaaaagccaccggttagaccgcctattctt
ccccctgctaccccgttttcgccgttgaaaactatggaactcactcctgctgctcggaaa
aagaagcagaaactacctgagaagcagcttcaagaaaaagttgctgctatcttaccggag
tctgctctctacactcagctgcttgagttcgagtctcgtgtcgatgctgcacttgcaaga
aagaaagttgatatccatgaagcacttaaaaacccgccttgcattcagaaaactcttcgg
atttatgtcttcaacacatttgcaaatcaagttaacacaattcccagaaaaccaaatgct
gatcctcctacctggacccttaagataataggtaggattttggaagatgggatcgatccg
gatcatcccggggtggtacaaagatcaaatcctttgtacccaaaattttcagctttcttc
aagagagtaaccatttccttggaccagaggttatatccagatagtcatatcatagtatgg
gaaaacgctcggtcgcctgcaccgaatgagggctttgaggtgaagagaaaaggggataaa
gaattttcggtcaacattcgattagaaatgaattatattccagagaagttcaagctatcg
cctgctttaatggaagttcttggtattgaagtcgatactcgcccgagaataatagctgca
atctggcattatgtaaaggctaggaaacttcagaatcccaacgatccgtctatctttcat
tgtgatcaacctcttcagaaggtatttggggaagacaagatgaaattcaccatggtttca
cagagaatatcacaacatttgttccctccgcagcctatacatttggagcataagattaag
ctttcagggaatagtccagtgggtacagcatgttatgatgtgttggttgatgtgcctttt
ccaattcacagggaattgtctgctcttttagccaatgcagagaagaacaaggagatcgat
gcgtgtgacgaagcaatatgtacagctataagaaaaattcatgagcatcgacgaagacga
gcatttttccttgggttcagtcagtcaccggtggagtttattgatgccctcattgattct
caaagcaaggatcttaaacttcttgcaggtgaaggtagtcgaaatcctgagaaggagcgc
cggtcggatttcttccatcaaccatgggttgaagacgctgtcatccggtacataaatcaa
aagccaaccgcaggaagcgacgcacctggaagtacatga
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