Cucurbita pepo subsp. pepo (vegetable marrow): 111792306
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Entry
111792306 CDS
T05351
Name
(RefSeq) SWI/SNF complex subunit SWI3D-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
111792306
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpep03021
]
111792306
03036 Chromosome and associated proteins [BR:
cpep03036
]
111792306
Transcription machinery [BR:
cpep03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
111792306
Chromosome and associated proteins [BR:
cpep03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
111792306
PBAF complex
111792306
GBAF(ncBAF) complex
111792306
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
ZZ
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
111792306
NCBI-ProteinID:
XP_023529451
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All DBs
Position
LG04:complement(1144129..1155330)
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AA seq
988 aa
AA seq
DB search
MEEKRRDAGNLPANTTDSPSSEPPSSRRRAGAQKRKVSALGGSNSSSAPSKRVTRDKFAL
SHPPNHNGPFTRARLGPNNGAGTASGNAAGGLSAAGSVKVEGSFLHSEAQRGDTLVAAAE
ELNKASRLANLEASFVADFESIKSRGTNAHVVPNHCGWFSWTKVHPIEERSMPSFFGGKS
GTRNPDIYIEIRNWIMKKFHANPSTQIESKDVSEMEIGELDARQEVMEFLDHWGLINFHP
FLSADSTSTSDVDDENQKDSSVEKLFHFETLESSPSVVPKTNVTTAPPRLLRESAISEEM
VRPEGPSVEYHCNSCSGDCSRKRYHCQKQADFDLCSECFNNGKFDSDMSSSDFILMESAE
VPGASGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFIQMPIEDSFLESE
NNDEVSAKETVVPPSIENDSSVPMDITESMDNKTTGKEASNVENATKEDTVEVKVGQDNS
KSKDVEVKAALDNSKSEDGGQKASEDIALNALREAFEAIGYVLTSDQHPLSFSDVGNPVM
ALAAFLARLVGPDVASASAHFSLKSMSQKSPSLDLATRHCFILEDPLDDKAQANPERVVN
VEAQQNVNEQCEKQRKDTSTSVLDDRALSTTNSSYKNGESVTEETTMENRNSADATKEHD
PMVNHGSDGTNKLKELTEPEVPKDDRTGVVKETENMESKLTTNTVEKLGEETSVEKPSQS
TLLSKDIHMSDLQYAEKTEIQKPVPSPSVNTSKIDDVPNPLPSVNELQPLVAANSVKVAS
SDAAMVSDPRDKNEPAQTETSKSVVDQGASKVSDSLPTEENATPQPVKPNPVIDKGTDDN
QSKNNEEENSKCTSKKEEKIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILIEKQ
LHKLERKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGVAPPGNR
MAMNFPISVPRPPMGMAPQRPPTSGPRV
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggaggagaagcgccgagacgccggaaacttaccggcgaacaccacggattcgccttca
tcggagccgccttcgtctcgccgtcgagctggagctcagaagcgaaaggtcagcgctctc
ggtggctctaactcctcatccgctccctcgaaacgcgttactcgggacaaatttgctctt
tcgcatcctccaaatcacaacggtcctttcactagagctcgacttggccctaacaatggc
gctggaacagcatcgggtaatgcggctggaggtctctccgccgcgggatcagttaaggtg
gagggatcttttcttcattccgaagctcagcgtggagacacactggttgccgcggcggag
gaattgaacaaggcgagtagattggcgaatttggaagcgtctttcgtagctgatttcgaa
tctattaaatctcggggtacgaatgctcacgtcgtcccgaatcattgcggttggttttca
tggacaaaagtccacccgattgaggaacgctcgatgccttcttttttcggtggaaagtct
ggcactcgaaatcctgatatttatattgagatacgtaattggattatgaaaaaattccat
gcaaatcctagtacgcagattgaatcaaaagatgtatcagagatggaaatcggagaacta
gatgctagacaggaggtgatggagtttctagaccattggggtttgattaattttcaccct
ttcctatccgcagattcaacttcaacaagtgatgttgatgatgaaaatcaaaaggactct
tcggttgagaagttgtttcactttgaaacattagaatcctctccatctgttgttccaaag
actaatgttaccaccgctccaccaagattgcttcgagaatctgcaatttctgaagagatg
gtgaggcctgagggtccatctgttgagtaccactgtaactcgtgctctggtgattgctct
cggaaacggtaccactgccagaagcaggcagattttgatttatgttcggagtgctttaac
aatgggaaatttgattctgatatgtcttcatcagattttattctcatggagtctgctgag
gttcctggtgctagtggaggtaagtggacagatcaggaaactctcctcctccttgaggct
ttagagctttataaggaaaactggaatgagattgcggaacatgtggccaccaaaacaaaa
gcccaatgtatattgcacttcattcaaatgccaattgaagatagctttcttgaatctgag
aacaacgatgaagtcagtgctaaagaaactgttgttccgccgtcaattgaaaatgattcg
tcagttcccatggatatcactgaatcgatggataataaaactactggaaaagaggcctcg
aatgtagaaaatgccaccaaggaagatacagttgaggtaaaagttgggcaggataattca
aaatcaaaggatgttgaagtaaaagctgctttagacaactcgaaatcagaagatggtggt
cagaaggcttctgaagacattgccttgaatgctttgagggaggcatttgaagccattggt
tatgtattaacatctgatcagcacccactttcattttctgatgtagggaaccctgtcatg
gcactggctgcattccttgcacgcttagttggacctgatgttgccagtgcatcagctcat
ttttctttgaaaagcatgtctcagaaatctcccagtttagatctggctacaagacactgc
tttattttagaagatccactagatgacaaggcacaagctaatccagagagggttgtcaat
gtggaagctcagcaaaatgtcaatgaacagtgtgaaaaacagaggaaagacacttctact
tcagttttagatgatagagccttatcaactactaacagtagttacaaaaatggagaatct
gtgacagaggaaactacaatggagaatagaaattctgcagatgctactaaagaacacgat
ccaatggttaatcatggttcagatggaacaaataaattgaaagaactgacagaaccagaa
gtgcccaaggatgatagaacaggcgttgttaaggaaactgaaaatatggaatcaaaattg
acaacaaatacagttgaaaaattgggagaagaaacttctgttgaaaagccatcacaatct
acgttgttatcaaaggatatacatatgtcagatctacagtatgctgaaaaaactgagatt
cagaaacctgttccatctccttctgtcaatacttcaaaaatagatgatgtgccaaatcct
ttaccttccgtgaatgaacttcagccattggttgctgccaattcagtgaaagtagcctca
agtgatgcagctatggtgtctgatcctcgagataagaatgaacctgcacaaactgaaaca
tctaaatctgtggttgaccagggagcaagcaaggtctctgattctttgcccacagaagag
aatgcaactccacagccagttaaaccaaatccagttattgataaaggaacagatgataat
caaagcaagaacaatgaagaagaaaattccaaatgtacaagtaagaaagaggaaaaaatc
gataagctgaagcgtgctgcagttacgacgcttgcagcagcagctgtgaaggcaaaagtt
ctggctaatcaggaagaggatcaaattcgtcaacttgccatgatattaatcgagaaacag
ctgcataagttggaaagaaagttagcatacttcaacgatatggacaatgtgtcgatgaga
atcagggagcaactggacaggtcaaagcaaaggcttttccaggaacgtgcgcagataatt
gctgctcgactcggcgtacctgcttcagcatcacgaggtgtggcaccaccaggaaacaga
atggctatgaacttcccaatctcagttccaaggcctccaatgggcatggcgccccaaagg
ccaccgacttctggaccacgggtatag
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integrated database retrieval system
