Cucurbita pepo subsp. pepo (vegetable marrow): 111792337
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Entry
111792337 CDS
T05351
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111792337
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpep03041
]
111792337
Enzymes [BR:
cpep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111792337
Spliceosome [BR:
cpep03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
111792337
Complex C
U4/U6.U5 tri-SnRNP related factors
111792337
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
AAA_22
DEAD
AAA_19
PWI
AAA_30
nSTAND3
AAA_16
SRP54
ABC_tran
Motif
Other DBs
NCBI-GeneID:
111792337
NCBI-ProteinID:
XP_023529497
LinkDB
All DBs
Position
LG04:complement(11681110..11693667)
Genome browser
AA seq
1047 aa
AA seq
DB search
MGGENDMKTWISDQLMSLLGFSQPTIVQYMIGLSKQAASPADVVSKLVVDFGLPSSNETL
AFAEGIFSRVPRKKSTGLNLYQKQEREAAILARNQKKYTLLDADDEEVLEDKGGSGDPRE
TENRKKRFRKKNEYQEDEDDEEESALERENRQVKRRTSSSEDDGSESEEERQRDQREREQ
LERNIRERDAAGTKKLTEQKLSRKEEEEAIRRSKALENDGTDTLRKVSRQEYLKKREEKK
LEEIRDDIEDEQYLFDGMKLTEVEYRELRYKKEIYELVKKRTDEADEINEYRMPEAYDQE
GGVNQDKRFAVAMQRYRDSGAADKMNPFAEQEAWEEHQIGKASMKFGSKNKKQADDYQFV
FEDQIEFIKASVMEGDEFVDEHQIESLEKSKAKSALEKLQEERKTLPIYPYRDQLLQAVN
DYQVLVIVGETGSGKTTQIPQYLHEAGYTKRGKVGCTQPRRVAAMSIAARVSQELGVKLG
HEVGYSIRFEDCTSDKTILKYMTDGMLLREFLGEPDLASYSVIMVDEAHERTLSTDVLFG
LVKDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEINFTKAPEADYLDA
AIVTALQIHVTKPPGDILVFLTGQEEIEAAEEIMKHRTRGLGTKISELIICPIYANLPTE
LQAKIFEPTPIGARKVVLATNIAETSLTIDGIKYVIDPGFSKIKSYNPRTGMESLQVSPI
SKASANQRAGRSGRTGPGMCFRLYTAYSYYNEMEDNTVPEIQRTNLANVVLTLKSLGIHD
LVNFDFMDQPPSEALLKALELLYALGALNKLGELTKMGRRMAEFPLDPMLSKMMVASEKH
KCSDEIISIAAMLSIGNSIFYRPKDKQVHADNARMNFHTGNVGDHIALLKVYNSWRETNY
STQWCYENYIQVRSMKRARDIRDQLEGLLERVEIELTSNLNDLDAIKKTIISGFFPHSAK
LQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWAVYHELVCTSKEYMRQVTELKPEWLVEIA
PHFYQLKDVEDLSQKKMPRGQGRPAEN
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atggggggagaaaatgacatgaaaacgtggatttctgatcagttaatgtcactgcttggt
ttctctcagccaacaattgtacagtatatgattggactatccaaacaagcagcatcacct
gctgatgtagtgagcaagttggtggtggattttggcttgccatcttccaatgaaacattg
gcttttgctgaaggaattttctctagagtgccacgcaagaaatcaactggtctaaatctt
tatcagaagcaagagagagaagctgcaattttagcaagaaatcaaaaaaaatacacacta
ctcgatgctgacgacgaagaggttcttgaagataaaggaggcagtggtgatccccgagaa
acagaaaatcgcaaaaaacgctttagaaagaaaaacgaatatcaagaagatgaagatgat
gaggaagaaagtgctcttgaaagagaaaataggcaggttaaaagacggacttccagttct
gaagacgatggctctgagtcggaggaagagcgacagcgtgatcaaagagagagggagcaa
ttagagcgaaatataagagaacgtgatgctgctggaaccaaaaagttaacagaacagaaa
ttgagcaggaaggaggaagaagaggcaattcggagatccaaagctttggagaatgatgga
accgatactttgaggaaagtttcaagacaggagtacttaaagaaaagggaggagaagaaa
ctggaagaaatcagagatgatatagaagatgagcaatatctttttgacggcatgaagctt
actgaagtagaatatcgggagctaaggtataagaaagaaatatatgagcttgtgaagaag
cggacagacgaggctgatgaaatcaatgagtacaggatgcctgaagcttatgatcaggaa
ggaggtgttaatcaggataagaggtttgcagtggcaatgcagcggtatagggattcaggt
gctgcagataagatgaacccatttgcagaacaagaggcatgggaggaacaccaaataggg
aaagcatcaatgaaatttggttccaaaaataagaagcaagccgatgattatcagtttgta
tttgaggatcagattgagtttattaaggcttcagttatggaaggtgatgagtttgttgat
gaacatcagattgaatcacttgaaaagtccaaggctaagtcagctctggagaagctgcag
gaagagagaaaaacattgccaatttatccatatcgtgatcagttactccaagctgtaaat
gattatcaggttcttgtaattgtcggtgaaactggttcgggaaaaaccacacagatacct
caatatcttcatgaagctgggtacacaaagcgaggaaaagttggatgcacacaaccgcgt
cgagttgctgctatgagcattgctgcccgagtatctcaagaactgggtgtcaagcttggc
catgaggttggttattcaatacgttttgaggattgcacgtcagataagactattttgaag
tacatgacagatgggatgttgttacgagaattccttggcgaacctgaccttgcaagctac
agtgttataatggtggacgaggctcatgaaagaacattatcaactgatgttctgtttggg
ttagtgaaggatattgcgaggtttcgacctgatttgaaattgctaatttcaagtgcaaca
cttgatgcggagaagttcagtgattactttgattcagctccaatatttaaaattcctggt
agacgatatcctgtagaaattaacttcacaaaagctccagaagcggactatttagatgca
gcaattgtgactgcgcttcagattcatgtcacaaagcctccaggagatatattggtgttt
ctcactggtcaagaagagattgaagcagctgaggaaataatgaaacatagaactcgagga
ctaggcacaaaaatttccgaactcattatctgccccatatatgccaacttaccaacagag
ctacaggctaagatatttgaacccacacccataggagcaaggaaagttgtcctggcaact
aatatagcagagacatcattaacgattgatggaataaaatatgttattgatcctggcttt
tcaaaaataaaatcctataacccaaggactgggatggagtcgttgcaagtgagtcccatt
tctaaagcatcagcaaaccaaagagcaggccgttctggacgaacaggccctggaatgtgc
tttcgtttgtatactgcttatagttattataatgagatggaagacaatacagtaccagaa
attcaaagaacaaaccttgctaatgttgtgcttacacttaagagccttggtattcatgac
ttggtaaattttgattttatggaccaacctccatctgaagcattgctaaaagctttggaa
cttctctatgcacttggtgctttaaataaactgggcgaactgactaagatgggcaggcgg
atggctgagtttcctcttgatcccatgctttccaagatgatggttgcttctgagaagcac
aagtgttcagatgagattatttctattgcagctatgctttctattggaaattctatcttt
tatcgcccgaaggataaacaagttcatgctgacaatgctcgaatgaattttcacactggg
aatgtgggggatcacattgcattgctgaaggtctacaactcttggagggaaacaaattac
tctacgcaatggtgctatgagaactacatccaggttagaagtatgaaacgtgctagagat
atcagagatcaacttgaagggctattagaaagggttgaaatcgaactgacttcaaatttg
aatgacttggatgcaataaagaagaccataatatctggttttttccctcactctgcaaag
ttacaaaagaatggctcgtatcggaccattaagcatccacagacagttcatatacatcca
agctcagggttggctcaggttctccccagatgggctgtgtaccatgaattagtatgtacc
tcaaaggaatacatgagacaggtaacggaattgaagcccgaatggttggttgaaattgct
ccacatttctatcagcttaaagatgtcgaagatttgagtcaaaagaagatgcctcgcgga
caaggtcgacctgcagagaactaa
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