Cucurbita pepo subsp. pepo (vegetable marrow): 111792457
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Entry
111792457 CDS
T05351
Name
(RefSeq) WD-40 repeat-containing protein MSI2-like
KO
K10752
histone-binding protein RBBP4
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03082
ATP-dependent chromatin remodeling
cpep03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
111792457
03083 Polycomb repressive complex
111792457
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cpep03036
]
111792457
Chromosome and associated proteins [BR:
cpep03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
111792457
Histone modification proteins
HAT complexes
HATB complex
111792457
HDAC complexes
Sin3A-HDAC complex
111792457
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
111792457
PRC2.2
111792457
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
111792457
Heterochromatin formation proteins
Other heterochromatin formation proteins
111792457
Chromatin remodeling factors
NuRD complex
111792457
NuRF complex
111792457
NuRF complex (fruit fly)
111792457
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
CAF1C_H4-bd
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
EIF3I
WD_LRWD1
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
MIOS_WD40
WD40_RFWD3
Beta-prop_SCAP
Beta-prop_SPT8
ANAPC4_WD40
NBCH_WD40
AftA_N
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_NUP159_NUP214
Motif
Other DBs
NCBI-GeneID:
111792457
NCBI-ProteinID:
XP_023529712
LinkDB
All DBs
Position
LG04:complement(6257441..6260184)
Genome browser
AA seq
394 aa
AA seq
DB search
MAGEQNGGVDEVMEEFAIWKKNSPYLYDLLISHSLEWPSLTVDWVPLAPFPHPANSSLAV
HKLVLGTHTSEEVPNFLMVADVILPVKASETRIDITGENPIMPEVEITQKIRVDGEVNRA
RCMPQNPEIIGAKTSGCEVYVFNCAKQGAKAQGGECDPDLRLRGHDKEGYGLSWSPFKEG
YLLSGSNDQKICLWDVSSMADKNVLDAMNVYEAHESVVGDVSWHLKNENLFGSVGDDCLL
VIWDLRTNKSVDSVRAHEEEVNYVSFNPYNEWILATASSDTTVGLFDLRKLAEPLHVLSS
HTEGVYEVEWDPNHETVLASSGDDRRLMVWDLNNMGNEQDGDAEDGPPELLFSHGGHKAK
ISDFTWNAYQPWVIASVAEDNSVQVWQMAKGIYR
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atggcgggagaacagaacggcggtgtcgatgaggtgatggaggaattcgccatctggaag
aagaattcgccctatctgtacgatcttctcatttcccactctcttgagtggccgtctctc
actgttgattgggtgccattggctccatttcctcacccagccaattcttctctcgctgtc
cacaagctcgttcttggaactcacacttcggaggaagtccccaactttctcatggtggcc
gatgtaattttacctgtcaaagcatccgaaactagaatcgacattactggggaaaacccc
atcatgccggaggtagagataacccagaagatacgtgttgatggagaggtgaacagagcg
cgatgtatgccgcagaacccagaaattattggggcaaaaacgagtggctgtgaggtgtat
gtttttaattgtgctaaacagggggcgaaggctcagggaggtgagtgcgatcctgatttg
agattgaggggtcatgataaagagggttatgggttgtcttggagcccgtttaaggagggt
tacctcttaagtggctcaaatgatcagaaaatctgtttgtgggacgtgtcttccatggct
gacaagaacgttcttgatgcaatgaacgtctatgaggctcatgaaagtgtggtcggtgat
gtgtcatggcatttgaagaatgagaacttgtttggatctgtaggcgatgattgcttgttg
gtgatatgggatttgcgcacaaataaatctgtggattctgttcgagctcacgaggaggag
gtgaactatgtttctttcaatccatataacgaatggattttagcaacagcatcatcagat
accaccgtgggtctattcgatctacgaaagcttgctgaaccactccacgttcttagcagc
cacacggagggagtgtatgaggtggagtgggatccaaatcacgaaactgtattagcatct
tctggtgatgatagaaggttgatggtatgggatctcaacaacatgggaaacgagcaagat
ggggatgctgaagatgggcctccagagctgctgttttcacacggaggccacaaggctaaa
atctctgacttcacctggaacgcctaccagccttgggttatagcaagcgtcgctgaagac
aactctgttcaggtctggcaaatggccaaaggtatttatcgatga
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integrated database retrieval system
