Cucurbita pepo subsp. pepo (vegetable marrow): 111792657
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Entry
111792657 CDS
T05351
Name
(RefSeq) protein CTR9 homolog
KO
K15176
RNA polymerase-associated protein CTR9
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpep03021
]
111792657
Transcription machinery [BR:
cpep03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
111792657
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_8
TPR_12
TPR_16
TPR_19
TPR_14
TPR_17
TPR_11
TPR_CcmH_CycH
TPR_6
TPR_9
TPR_7
ARM_TT21_C
TPR_10
ANAPC3
TPR_Slam
ARM_TT21_2nd
ARM_TT21_5th
Fis1_TPR_C
NatA_aux_su
HAT_PRP39_C
Motif
Other DBs
NCBI-GeneID:
111792657
NCBI-ProteinID:
XP_023529973
LinkDB
All DBs
Position
LG04:complement(9125840..9134927)
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AA seq
955 aa
AA seq
DB search
MHEPSTWVGKGQLLLTKGEVEQAFAAFKIVLDGDRDNVPALLGQACVEFNRGHFSESLEL
YKRALQVYPDCPAAVRLGIGLCRYQLKQYGKAKQAFERVLQLDPENVEALVALAIIDLNT
NDAGRIRNGMEKMQRAFEVYPFCAMALNYLANHFFFTGQHFLVEQLTETALAITNHGPTK
SHSFYNLARSYHSKGDYEKAGLYYMASAKEANKPREFVFPYYGLGQVQLKMGDLRSALSN
FEKVLDVCPDNCDTLKVLGHIYVQLGQADKAQETLRKATKIDPRDAQAFLDLGELLISTD
EGAALDAFKTASNLLKKGGQEVHIEVLNNLGVLHFEREEFELAERIFKEALGDGIWLDFI
DGKERCPTIDASASVLQYKDMELFYRLEREGRSIVLPWKKVTTLFNLARLLEQLHNIEVA
SVLYRLILFKYPDYVDAYLRLASIAKARNYVQLSIELVNDALKVNEKCSNALSMLGELEL
KNDDWVRAKETFRAAGEATDGKDSYATLSLGNWNYFAALRNEKRNPKLEATHLEKSKELY
TRVLVQHPANLYAANGAGVILAEKGQFDVSKDIFTQVQEAASGNIFVQMPDVWINLAHVY
FAQGNFSLAVKMYQNCLRKFYYNTDYQILLYLARTFYEAEQWQDCKKTLLRAIHLAPSNY
TLRFDAGVAMQKFSASTLQKTKRTADEVRSTVVELENAVRVFSQLSAASNLHFHGFDEKK
IDTHVCYCKHLLEAAGVHLKAAEHEEQQIRQRQELARQVAFAEDARRKADEQRKFQLERR
KLEDEEKRMMQQEQHFKRVKEQWKSTTPAKRRERSEIDDDEAGNSEKRRRKGGKRRKKDR
KGKSHYETEEADNDMMDDQELDNEDNNISYRESHSQMNDQDDDVEGNDQDALAEAGLEDS
DAEDEALQGVPSSNAGRRRATWSESEDDEPMHTQGKSRLERENSAGLEGSDGEIK
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atgcatgaaccttcaacttgggttggaaaaggtcagcttttattgaccaaaggggaagta
gaacaggcatttgctgcattcaaaattgttttagatggagatcgtgacaatgttcctgct
cttctaggtcaggcatgtgttgaattcaaccgtggacatttttctgaatcactagagcta
tacaagagggccttgcaagtgtatcctgattgccctgctgctgtgagacttggcataggc
ctgtgccgctatcaattgaaacaatatggaaaggctaagcaagcatttgagagagtttta
cagttggatccagaaaacgtggaggctcttgttgctctggcaatcattgatctgaacaca
aatgacgctggtcgaatcagaaatgggatggaaaagatgcagagggcatttgaagtatac
cctttttgtgcaatggctctgaattacttggcaaatcactttttctttactggtcaacac
tttttggtggagcaattgactgaaactgcgcttgccattaccaaccatggacctacaaaa
tctcattccttctacaatcttgctcggtcttaccatagcaagggagactatgagaaagct
ggcttgtactacatggcatctgcaaaggaagctaataaacctcgcgagtttgtatttcct
tattatgggttgggtcaagttcaactgaagatgggagatcttagaagtgcattgtcaaat
tttgagaaggttttggacgtatgtccggacaattgtgatacactgaaagtacttggtcat
atttatgttcagcttggacaggctgacaaggcccaggagactttaaggaaagctacaaaa
attgatccacgtgatgcacaggcctttttagatcttggagaattgttgatttcaactgat
gaaggagctgctttggatgcctttaagactgctagcaatctcttaaaaaagggaggtcaa
gaagtacatattgaagtgctcaacaatcttggggttcttcactttgaaagagaagagttt
gagcttgctgaaagaatttttaaggaggctttaggtgatgggatttggctagattttatt
gatggtaaagagagatgccctactattgacgcaagtgcgtccgttcttcaatacaaggac
atggaattattttatcgactggagagggaaggtcgttcaatcgtactaccatggaagaaa
gtcacaactctatttaatctggctcgattgttagagcagttgcataacattgaagttgca
agtgtactctatcgcttgattttgtttaaatatccagactatgtagatgcttacctgagg
cttgcgtccattgcaaaagctagaaactatgttcaactaagcattgaattggttaatgat
gctctgaaagtgaacgagaagtgctcaaatgccttgtctatgctaggcgagcttgagtta
aaaaatgatgactgggttagggcaaaagaaactttccgggctgcaggtgaagccactgat
ggaaaggattcttatgcgactctttctttgggaaactggaactactttgctgcacttcga
aatgagaaaagaaatcccaagttggaggctacccatttggaaaaatctaaagaactatat
acaagggttctggtacaacatcctgctaatttgtatgccgctaatggagctggggtcatc
ctggctgaaaaaggtcaatttgatgtttcgaaagatatttttacacaagttcaagaagct
gcaagtgggaacatttttgtccagatgccagatgtgtggatcaatttggcacatgtctat
tttgctcaaggaaacttttcactagctgtgaaaatgtatcaaaattgcttgcggaagttt
tattacaatacagattatcaaattcttctctatctagctcgtacattttatgaagctgaa
cagtggcaagactgcaaaaagaccctactgagagctatccacttggcaccctcaaattat
actttaagatttgatgctggtgtagcaatgcagaagttttcagcttcaacactacaaaag
acaaaaaggacagcagatgaggtgcgttcaacagtagtggagctggaaaatgctgttcgt
gtttttagtcagttatctgctgcctccaacctccactttcatgggtttgatgagaagaag
attgatactcatgtgtgttactgcaagcacttgctggaagctgctggagttcacctcaaa
gcagcagaacatgaagagcagcagatccgtcaaagacaagaactagcacgacaagttgca
tttgccgaggatgcccgtcgaaaagcagacgaacaaaggaaatttcaactggagaggaga
aaactggaagatgaggaaaagcggatgatgcaacaggagcagcattttaaacgtgtgaag
gagcaatggaagagcaccacacctgctaaacgaagagaaaggtcagagattgatgacgat
gaagctggtaatagtgagaagaggagaaggaaaggtggaaagaggagaaagaaagacagg
aaggggaaatcgcattatgagacagaggaggctgataatgatatgatggatgatcaagaa
ctagacaatgaggataataacataagttatagggagtcccacagccaaatgaatgatcag
gacgatgatgtagaagggaatgatcaggatgctcttgctgaagctgggcttgaagattct
gatgctgaggatgaagcgttgcagggtgtaccttcatccaatgcaggccgacgaagggcc
acatggtcggaatcggaagacgatgagcctatgcacacgcagggaaagtccagacttgaa
agagaaaactccgctggactagagggtagtgatggagaaatcaaatga
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integrated database retrieval system
