Cucurbita pepo subsp. pepo (vegetable marrow): 111792736
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Entry
111792736 CDS
T05351
Name
(RefSeq) exosome complex exonuclease RRP44 homolog A-like
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111792736
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111792736
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
111792736
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Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
PIN_4
OB_Dis3
Rrp44_CSD1
Rrp44_S1
OB_HELZ2
CSD2
G6PD_C
OB_RNB
PpPFK_gamma-like_C
Motif
Other DBs
NCBI-GeneID:
111792736
NCBI-ProteinID:
XP_023530073
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All DBs
Position
LG04:3311687..3322425
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AA seq
936 aa
AA seq
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MLHNKSFVKKTKSGKVTKQVREHYLRDDIYCGTSICKRCDSSVARLSASTSPILVLDTNV
VLTQIDLLENPAIDDVVMLSVVLEEVKNKNLSVYNRVRALCFNPLRRFFVFSNEHHKDTY
VKEMSGESKNNRNDRAIRVATQWYQNHLGGAARVLLITNDRENRMKAIEEGIYAESIESY
VRSLGQTHLLDLLVHSANEDTIMEEVEDLRPSKRKVLYTEHKPMSEITSGLHRGIYHQGR
LRVNQFNPFEAYVGSESIGDEIIIYGRTNMNRAFDGDVVAVELLSRDQWHEEKSLTLADE
EDDEEEDVHLVPGSADDAPRTAFVLQTSDGDSTSSSPRPAGRVIGIIKRNWHSYCGSLDP
MPMPAGSGGVAYALFVSKDRRVPKIRIQTRQLENLLDKRIIVAVDSWDHLSRYPSGHYVR
SIGEIGDRDTESEVVLIENDINNRPFSSQVMACLPPLPWSVSPADVANPIRQDLRHLNVF
SVDPPGCKDIDDALHCTALPNGNFEVGVHIADVTNFVHTGTALDDEAAQRGTSVYLVERR
MDMLPKPLTEDICSLRADVERLAFSVIWEMTPEADIISTSYTKSIIKSCAALSYVEAQAR
MDDSRLMDPITRDLRNMNALAKKMRLRRIERGALTLASAEVKFQIDTETHDPLDIGMYEI
REANQMVEEFMLAANVSVAEKILKHFPLCSLLRRHPTPTKEMLEPLIRTAVAVGLDLDIS
SSKALADSLDRALGDDPYFNKLIRILATRCMTQAVYFYSGDLSPPEYQHYGLAAPLYTHF
TSPIRRYTDVIVHRLLAASLGIYKLPTLFHDRLKLTTIADNLNYRHRNAQMAGRSSVELH
TLIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPIYLSARGEKQNGEWLVDEQDQKIK
RLDGSITYNVLQAVRIHMEVVEPQPNRPKLQLKLIT
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atgttgcataacaaatcgtttgttaaaaagacgaagtctgggaaggtgacgaagcaagtg
agagaacactatcttcgagatgatatttactgtgggacttcaatttgcaaaagatgtgat
tcttctgttgctcgcttgagtgcttctacatccccaattctagttcttgacaccaatgtc
gttcttactcagattgatttgctagagaatcctgctattgatgatgtggttatgctatca
gttgtgctggaagaagttaagaacaagaacttgtctgtttacaatagagttagagctctc
tgctttaatcctttgaggagattctttgtcttctccaacgagcaccacaaggatacatat
gttaaggagatgagtggagaaagtaaaaataatcgaaatgatagagcaattcgagtggct
actcagtggtatcagaatcatcttggtggtgctgctcgggttctactcataacaaatgac
agagagaataggatgaaggccattgaagagggaatttatgcagagtcaattgaatcatat
gttagatctttgggtcaaactcatttacttgacctgttagtgcatagcgcaaacgaagat
acaattatggaggaagttgaagatttgaggccatccaagagaaaggttctttacaccgag
cataaacccatgtcagaaattacttctggcttgcatcgtggtatatatcatcaaggaagg
ctccgtgtcaatcaattcaatccgtttgaagcatatgttggaagtgagagtattggtgat
gaaataataatttatggacgtaccaacatgaaccgggcttttgatggtgatgttgtggcg
gttgaacttctatctcgagatcagtggcatgaagagaagtctctgactttagcagatgaa
gaagatgatgaggaagaagatgttcatcttgttcctggtagcgcagatgatgccccaaga
actgcatttgtacttcagacctctgatggagattctacttctagttcaccacgtccagct
ggacgtgtcattggtattataaagcgtaactggcactcttattgtggttctttggatcca
atgcctatgcctgctggaagtggcggcgttgcctatgctctatttgtttcaaaagatcgc
cgggttccaaaaattagaatccaaactcgccagcttgagaatcttttggacaagagaatt
atcgtagcagttgattcttgggaccatctatctagatatccttctggccattatgtgcga
tctataggagaaataggagatcgagatactgaaagtgaggtggtcttaattgaaaatgat
ataaacaacaggccgttttcttcacaagttatggcatgcttgccaccattaccatggtca
gtgtctcctgctgatgtagcaaaccccattcgacaggatttgcggcacctgaatgttttt
agtgtcgaccctccaggttgcaaagatatcgatgatgcacttcactgtacagctcttcca
aatggaaattttgaagttggagtccatattgctgatgtaacaaactttgtacacactggc
actgcattggatgacgaggctgcacaaaggggtacatcagtttatcttgttgaacggaga
atggacatgcttccaaaaccattaacagaagatatatgttctcttcgagccgatgtggaa
agactggcattttcagtaatttgggaaatgacacctgaagcagatattatttctactagc
tacacaaaaagcatcattaaatcatgtgctgcattatcatatgttgaagctcaagcgagg
atggatgacagtcgattgatggatccaataactagagatttgagaaatatgaatgccttg
gcaaagaaaatgaggttgagacgaattgagagaggtgctttgactcttgcttcagctgaa
gtcaaatttcaaattgacactgagacacatgaccctcttgatattggtatgtatgaaatt
cgagaagctaaccaaatggtagaggagtttatgcttgctgctaatgtttcggtagcagaa
aaaattcttaagcattttccgctgtgttcattattacggcgccatcctacaccaactaaa
gagatgcttgaacctttgattcgcacagctgttgctgttggtcttgacttggatatctca
tcatccaaagctctggctgattcacttgatcgtgctttgggagatgatccgtacttcaat
aagctgatcagaatactagctactagatgtatgacacaggctgtttacttctatagcgga
gacctcagtcctccagaatatcaacattatgggcttgcagcacctctgtatacccatttc
acctctcctattcgacgatacacagatgtcatcgtgcacagattgctcgctgcatctttg
gggatatacaaacttccaaccctgttccatgacagactaaaactcaccacaatcgctgat
aacttaaattatcgacatagaaacgcccagatggctggccgatcttcagtagagcttcat
actttaatttacttcaaaaaacggcctacggacacggaggccagaatagtgaagataaga
tcaaacggttttatagtatttgttcccaaatttggtatcgagggaccaatatacttgtca
gcaagaggtgagaagcaaaatggagaatggttggtggatgagcaagaccagaagatcaaa
aggttggatggtagcataacatacaacgttctacaggcagtgagaattcacatggaggtt
gtggagccccaaccaaatcgaccaaagcttcagcttaaacttattacttaa
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