Cucurbita pepo subsp. pepo (vegetable marrow): 111792879
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Entry
111792879 CDS
T05351
Name
(RefSeq) serine/arginine-rich splicing factor SR30-like
KO
K12890
serine/arginine-rich splicing factor 1
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111792879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpep03041
]
111792879
Spliceosome [BR:
cpep03041
]
Common components
Common spliceosomal components
SR proteins
111792879
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
111792879
NCBI-ProteinID:
XP_023530260
LinkDB
All DBs
Position
LG04:1659291..1663932
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AA seq
334 aa
AA seq
DB search
MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED
AIYGRDGYKFDGCRLRVEFAHGGRGGHSSSIDHYSRSGSSRGGVSRRTDYRVLVTGLPPS
ASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAY
VRVKEYDSRRSYSRSPSRDSRQSDYSRSPSRSPYGERGRSRSRSRSRSRSQSRSLIRSHS
HSHSGRSTSFSPRLKHSRRSPSISEQSQSKSLSRSRSRSRSGSPVSSRHERKIQNRSRSR
SKSRSLSRSLSPEGRSDRSRSRSQSVDSRDRYSE
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcagaaatagccgcaccatctatgttggtaaccttcctggagatattcgtttg
agagaagtagaagatctgttctacaagtatggaccgattgtcgacattgatttgaagatt
cccccacgcccaccgggctatgcttttgtggagtttgaagatgttcgtgatgctgaagat
gcaatttatggccgagatggatacaagtttgatggatgtcgtttacgggtggaatttgcg
catggtggaagggggggacattcctcttcaatagatcattatagtcgtagtgggagtagc
cgtggtggtgtttctcggcgaactgactatcgtgttttggtcactggattacctccttct
gcttcatggcaagacctgaaggatcacatgcgtcgtgctggtgatgtctgcttctctgaa
gttttccgtgatcgtggtgggatggcaggaatagtagattatacaaactatgatgacatg
aaatatgctatacggaaacttgatgattctgaatttcgaaatgccttttctcgtgcgtat
gtacgggtgaaggagtatgactctaggcgtagctattccagaagtccttcccgtgattct
agacaaagtgattattctagaagtcctagtcgtagtccttatggggaaagaggtcgtagc
cggagcagaagccggagtcgaagtagaagtcaatctcgaagccttatacgtagtcatagc
catagtcatagtggcaggagcacaagtttttctccaaggctgaagcactctcgtcggtcg
ccgtcaatttctgaacaatcccagtcaaagtctctttcaaggtcaaggtcgagatccaga
tcaggatcaccagtttcctctcgtcatgagaggaaaattcagaatcggagcagatctcgt
tccaagtccagaagcctgtccagatctctttcacctgaagggagatctgatcgaagccga
agtcgaagccaatctgttgattccagggatcgatattcagaatag
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