Cucurbita pepo subsp. pepo (vegetable marrow): 111792921
Help
Entry
111792921 CDS
T05351
Name
(RefSeq) WD-40 repeat-containing protein MSI4-like
KO
K10752
histone-binding protein RBBP4
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03082
ATP-dependent chromatin remodeling
cpep03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
111792921
03083 Polycomb repressive complex
111792921
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cpep03036
]
111792921
Chromosome and associated proteins [BR:
cpep03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
111792921
Histone modification proteins
HAT complexes
HATB complex
111792921
HDAC complexes
Sin3A-HDAC complex
111792921
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
111792921
PRC2.2
111792921
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
111792921
Heterochromatin formation proteins
Other heterochromatin formation proteins
111792921
Chromatin remodeling factors
NuRD complex
111792921
NuRF complex
111792921
NuRF complex (fruit fly)
111792921
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EIPR1
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_EML
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_DCAF12
EIF3I
eIF2A
Beta-prop_IFT122_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_SPT8
WDR90_beta-prop_4th
Beta-prop_WDR35_TULP_N
WD40_RFWD3
ANAPC4_WD40
Beta-prop_IP5PC_F
Motif
Other DBs
NCBI-GeneID:
111792921
NCBI-ProteinID:
XP_023530316
LinkDB
All DBs
Position
LG04:complement(9291379..9297427)
Genome browser
AA seq
521 aa
AA seq
DB search
MDSSQSQQQQQQQQQQQQQQQPQQQQQQLQQQPVVKKKETRGRKPKPKDEKKDEQQAKKM
KAQQQPSVDERYTQWKSLVPVLYDWFANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQ
TDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQN
ARIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQENAEFALAMCPTEPYVL
SGGKDKLVVLWSIQDHITTAASDAAASKSPGSGGSIIKKAGETNDKTAEGPSIGPRGVYH
GHEDTVEDVTFCPSNAQEFCSVGDDSCLILWDARTGTSPAVKVEKAHNADLHCVDWNPHD
DNLIITGSADNSIRLFDRRNLTSNGVGSPIYKFEGHKAAVLCVQWSPDKSSVFGSSAEDG
LLNIWDYDKVGKKTERATRTPAAPPGLFFQHAGHRDKVVDFHWNASDPWTLVSVSDDCDT
TGGGGTLQIWRMSDLIYRPEDEVLAELEKFKSHVIECAAKP
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atggactcttctcagtcgcagcagcagcagcagcagcagcagcagcagcagcagcagcaa
cagcctcaacaacagcaacagcagctgcagcagcaacctgttgtgaagaagaaggagacc
agaggccgcaagccgaagcccaaggacgagaagaaggacgagcagcaagctaagaagatg
aaggctcagcaacaaccctctgtcgacgagcgctacactcagtggaagtctcttgttcct
gttctttacgactggttcgccaaccacaatcttgtttggccttctctctcttgccggtgg
ggtcctcagctcgagcaagcgacgtataagaatcgacagcggctttatctatctgaacag
actgatggtagtgttccgaatacactggtcattgcaaattgtgaagttgtgaagcccagg
gttgcagctgcggagcacatttctcagttcaatgaagaagcacgctctccatttgtaaag
aagtacaagactatcatacaccctggtgaggttaacagaattagggaacttccccagaat
gctagaattgttgctacacacactgatagtccagatgttctcatttgggatgttgaggca
cagcctaatcgtcatgctgtccttggtgccacaaattctcgcccagatttgattcttact
ggtcatcaagaaaatgctgagtttgctctagcaatgtgccccactgaaccttatgttctc
tctggagggaaggacaagttagtagttttatggagtatccaggaccatataacaactgcc
gcctcagacgctgctgcctcaaagtcaccgggatctggtggttctatcataaaaaaggca
ggagaaacaaatgataaaactgctgaagggccttctattgggccacgaggagtttaccat
ggccacgaggatactgttgaagatgttaccttctgtccgtccaatgcacaggagttttgc
agtgtgggagatgattcttgcctgatattatgggatgctcgtactggcactagcccagct
gtaaaggtcgaaaaagcacataatgctgatcttcattgtgttgattggaatccccatgat
gataatcttatcataacaggttcagcagataattctattcgcttgttcgatcgtcgtaat
ctcacttctaacggagtaggctcacccatctataaatttgagggtcacaaagctgctgtt
ctttgtgttcagtggtccccagataaatcatccgtctttggaagttctgcagaggatggg
ctgttaaatatttgggactatgataaggttggtaaaaagacagaacgagctacaaggaca
cctgctgctcctccaggcctatttttccagcatgctgggcacagggataaagtcgttgac
ttccattggaatgcttctgatccatggactcttgtcagtgtatctgatgattgtgatacg
actggtggaggaggaacgttgcagatatggcgcatgagtgatctaatttatcggccggaa
gatgaggtgttagctgagcttgaaaagttcaaatctcacgtaattgaatgtgctgcaaag
ccttga
DBGET
integrated database retrieval system
