Cucurbita pepo subsp. pepo (vegetable marrow): 111793012
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Entry
111793012 CDS
T05351
Name
(RefSeq) polyadenylate-binding protein 2
KO
K13126
polyadenylate-binding protein
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03015
mRNA surveillance pathway
cpep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111793012
09123 Folding, sorting and degradation
03018 RNA degradation
111793012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111793012
03041 Spliceosome [BR:
cpep03041
]
111793012
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
111793012
mRNA cycle factors
Stress granule specific factors
111793012
Spliceosome [BR:
cpep03041
]
Complex C
Other components
Complex C specific factors
111793012
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_3
RRM_Nup35
RRM_RdRP1_2
DUF4523
SET1_RBD
GH97_C
Motif
Other DBs
NCBI-GeneID:
111793012
NCBI-ProteinID:
XP_023530444
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All DBs
Position
LG04:complement(3623306..3627284)
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AA seq
645 aa
AA seq
DB search
MAQVPSPPQVPGADPAANGQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLT
TRRSLGYGYVNYSSPVDATRALDALNFTPLNGNPIRVMFSHRDPSMRKSGSGNIFIKNLD
KTIDHKALHDTFSAFGSILSCKVATDASGQSKGFGFVQFDKEEAALKAIEKLNGMLLNDK
QVFVGPFVRKQERESVSEKTKFNNVFVKNMSETTSDEDLQNMFEEFGPITSVVVMRDGDG
KSKCFGFVNFENADDAARSVEALNGKKVDGKEWYVGKAQKKSEREVELKNRFEQSVKEAA
DKYQGTNLYVKNLDDSIDDDKLKELFSAFGTITSYKVMRDPNGMSRGSGFVAFSTPEEAA
RALGEMNGRIIVSKPLYVALAQRKEDRRARLQAQFSQLQPMAMASSVAPRGMPMYPPGAP
GIGQQIFYGQAPPAIISSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQPGQQGQRSGGRR
AGAIQQTQQPGPMMQQQMLPRGRVYRYPPGRGMPDLPMPGVAGGMFSVPYEMGGMPPRDT
VHPQPIPVGALASALANAAPDHQRTMLGENLYPLVEQLEVDNAAKVTGMLLEMDQTEVLH
LLESPEALKAKVAEAMEVLRTVGQQTGNAAADQLASLSLSDNLDA
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atggctcaggttccatctccacctcaagttcccggtgccgatccagcggccaatggacag
catgtcacgacgtcgttgtatgttggagatcttgacgtcaatgtcaccgattcgcagctc
tatgatctttttaatcaggtggggcaggttgtttctgttagggtttgcagggatttgacg
acccgccgatcgcttggttatggctatgtcaattacagcagccctgtggatgcaacaagg
gcattagatgcgctaaacttcacccctttgaatggaaatcctataagggttatgttttct
catcgtgaccctagcatgcggaaaagtgggtctggaaatatttttatcaagaatttggac
aagacaattgatcacaaagcgttgcatgatacattttctgcatttggaagcattttatcc
tgcaaggttgctacggatgcatccgggcagtctaaaggctttggctttgtgcaatttgat
aaggaggaggctgccttaaaagccatagagaagttgaatggaatgctgctaaatgacaag
caggtgtttgtgggacctttcgttcgcaagcaagaacgagaaagtgtcagtgagaaaaca
aagtttaataatgtttttgttaagaatatgtcggaaactacatctgatgaagatttacag
aatatgtttgaggagtttggaccaataaccagtgttgtggtgatgagggatggggatgga
aaatccaaatgctttggctttgtaaactttgagaatgcagacgatgctgcgaggtctgtt
gaagcacttaatggaaagaaggttgatgggaaagagtggtatgttggaaaagcccagaag
aaatctgaaagggaagttgaattgaaaaatcggtttgagcagagtgtaaaagaagctgct
gacaagtatcaaggtacaaacctatatgttaagaatttagatgatagcattgacgatgat
aaactgaaggagttattctctgcgtttggaaccattacctcatacaaggttatgcgagac
cctaacggaatgagcagaggttctggatttgttgcattctcaactcctgaagaagctgct
agagctcttggagagatgaatggaagaataattgtgagcaaacctctctatgttgcactt
gcgcagaggaaggaagatagaagagcgaggttgcaggcacagttttcccaattgcagcca
atggcaatggcatcttcagttgcacctcgtggcatgccaatgtatcctccaggtgctccg
ggtatcggacaacaaatattctatggacaagctccgcctgctattatttcctcacagcct
ggctttggttatcagcagcaactcatgcctggaatgaggcctggtggaggtcccatgcca
aatttctttgtaccaatggttcagccgggccagcaagggcaaagatctggtggcagacgt
gctggtgccattcagcaaacccagcagcccggtccaatgatgcagcagcagatgctccca
cgaggacgtgtgtaccgttatcctcctggacgtggaatgcctgatcttcccatgcctgga
gttgctggaggtatgttctctgttccatacgagatgggtggtatgcctccacgggatact
gttcaccctcaaccaattcctgttggtgctttggcttctgccctcgcaaacgcagctcca
gaccatcaacgaacgatgctgggggaaaatctgtatccactcgtggaacagctagaggtt
gataatgcagcaaaggtgaccggaatgctactggaaatggaccaaactgaggttctgcac
ttgctcgagtcgccggaggctctgaaagccaaggtggcggaggctatggaggttttgaga
actgtgggtcagcagacaggcaatgcagcagctgatcaattggcttcactgtccctgagt
gacaaccttgatgcctaa
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