Cucurbita pepo subsp. pepo (vegetable marrow): 111793068
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Entry
111793068 CDS
T05351
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 14
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111793068
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpep03041
]
111793068
03009 Ribosome biogenesis [BR:
cpep03009
]
111793068
Enzymes [BR:
cpep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111793068
Spliceosome [BR:
cpep03041
]
Complex A
U1 snRNP components
U1 related factors
111793068
Complex B
111793068
Ribosome biogenesis [BR:
cpep03009
]
Eukaryotic type
Pre-60S particles
Helicases
111793068
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
111793068
NCBI-ProteinID:
XP_023530547
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All DBs
Position
LG04:complement(5852107..5857512)
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AA seq
691 aa
AA seq
DB search
MAATATAVSVEPRYAPEDPTLPKPWKGLVDGKTGYLYFWNPETNATQYERPVPAAPLNSS
VVSISSSVQIQKQASGHSYYNNFNENNEKYGRSVHEAPKHEVARGETFHSNGTSNGTPST
GHGATQLKVHRPSDAGSGLSAEAYRQRHEITFSGDNVPLPFTSFEATGFPPEILREVHNA
GFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRIRNDPKLGPTVLVL
SPTRELATQIQDEAVKFARSSKISCACIYGGAPKGPQLRDIDRGVDIVVATPGRLNDILE
MRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPKEVRKIASDL
LVNPIQVNIGNVDELVANKAITQHIEALAPLEKHRRLEQILRSQEPGSKIIVFCSTKKMC
DQLARNLTRQFGAAAIHGDKSQGERDHVLGQFRTGRTPILVATDVAARGLDIKDIRVVIN
YDFPTGVEDYVHRIGRTGRAGATGIAYTFFGEQDAKYASDLIKILEGANQQVPSQLRDMA
SRSYGMAKFRRWGSGSDGGRGGRNFSSSGGRGGRGSSFFSSAKPERGGGFDSRERSDVGY
NRARSRSPPRGFHNRNIPPRGNDNGSKNGSANWSLGRSRSRSRSPNRFNRAPAVRERERE
RSPVKVNGGGYEKSTRPYPREEDEEGMIRQD
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggcggccactgcaactgctgtctctgttgaaccacgatatgcaccagaggatccaacc
ctccccaaaccatggaaaggtttagttgatgggaagactgggtatctttacttttggaat
ccagaaactaatgccacccaatacgagagacctgtgcctgctgctcccctgaattcatca
gtagtgtctattagttcttcggttcaaattcaaaagcaagcctcaggccattcttattat
aacaatttcaatgaaaataatgaaaagtacggacgaagtgtccatgaggcaccaaaacac
gaggtagcaaggggtgaaacgtttcattcaaacggtacctcaaatggaacccctagtact
gggcatggagcaacacagttgaaagtgcatagaccatcagatgcaggaagtggtttatcc
gccgaggcttatcgtcaacgacatgaaataactttttcgggagataatgtgccgctgcca
tttacatcatttgaagccactggtttcccacctgagattcttagggaggtacataatgca
gggttctctgctccaactccaattcaagcgcagtcatggccaattgctcttcaaagtagg
gatatcgtagctattgctaaaactggctcagggaaaactcttgggtacttaataccaggt
tttattcatctcaagcgcattcgaaatgatcctaagctaggtcccactgttttggtgttg
tcgccaacaagggagctggcaacacagattcaagatgaagctgtgaaatttgcgaggtca
tccaaaatctcatgtgcgtgtatatatggaggagcaccgaagggtccacaattgagggat
attgaccgtggagtagatattgtagttgcaactcctggtcgtttgaatgatattcttgag
atgaggagaatcagtctccatcaggtttcttatcttgtactagacgaggctgaccgaatg
ctggatatgggattcgaaccccagataagaaagatcgtaaaggaggttcctgctcgccgg
cagaccctaatgtacacagctacttggccaaaagaagttcgaaaaatcgcgtcagatcta
cttgttaatcctattcaagtcaacatcggtaatgtcgatgagcttgttgccaacaaggca
atcactcagcatattgaggcattagcgcctttggagaagcatagacgattggagcagata
ttgagatctcaagaaccaggatctaaaataatagttttttgttctacaaaaaaaatgtgt
gatcaacttgctcgtaaccttactcgccagttcggagctgctgcaatccatggagacaaa
tcccaaggcgagagagatcacgttctcggtcaatttcgcactgggaggactcccatactc
gtagctactgatgttgcagctcggggattggacattaaagacatcagggttgttatcaac
tatgacttcccgaccggagtggaggattatgtccataggattggtcgaaccggaagagca
ggtgctactggtattgcttacacattcttcggcgagcaggacgctaagtatgcttcagat
ctgattaaaattttggagggagctaaccagcaagtcccatcgcaacttcgagatatggct
tctcgaagttatggaatggccaagtttaggcgttggggttctggctctgacgggggtcgt
ggtgggcgcaatttttcgagttctggtgggcgaggtgggcgtggatcgtctttcttttct
tctgccaagcccgaacgaggtggtggctttgactcacgtgagaggtctgatgttggatac
aaccgtgctcgcagtcggagtcctccacgaggttttcacaatcgtaacattccacctcgg
ggaaatgacaatggtagtaagaatggctctgcaaactggagcctaggccgaagtcgaagc
cgaagccgaagtcctaaccgtttcaaccgggctcctgcagtacgagaacgcgaacgtgaa
cggtctccagtgaaggtgaacggtggaggatacgaaaagagtactcggccatatcctcga
gaagaagacgaggagggcatgatccgacaagattga
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