KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111793234
Entry
111793234         CDS       T05351                                 
Name
(RefSeq) autophagy-related protein 16
  KO
K17890  autophagy-related protein 16-1
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep04136  Autophagy - other
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04136 Autophagy - other
    111793234
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:cpep04131]
    111793234
   03029 Mitochondrial biogenesis [BR:cpep03029]
    111793234
Membrane trafficking [BR:cpep04131]
 Autophagy
  Autophagosome formation proteins
   Atg12 conjugation proteins
    111793234
 Others
  Specific organelles associated proteins
   Auto phagosome
    111793234
Mitochondrial biogenesis [BR:cpep03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    111793234
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st EIF3I Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML_2 WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_C WDR90_beta-prop_4th ATG16 Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_SCAP NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_SPT8 Beta-prop_IFT140_1st Beta-prop_NWD2_C Beta-prop_IFT122_1st Beta-prop_WDR35_TULP_N WDR54 Beta-prop_DCAF4 Beta-prop_EIPR1 eIF2A Beta-prop_HPS5 WD40_RFWD3 Ge1_WD40 Beta-prop_WDR19_1st Beta-prop_RIG_1st Beta-prop_NUP159_NUP214 Beta-prop_Vps41 KNTC1_N Beta-prop_VPS8 Cytochrom_D1 PQQ_2 Beta-prop_WDR75_2nd DUF4094 zf-C4H2 Filament
Other DBs
NCBI-GeneID: 111793234
NCBI-ProteinID: XP_023530786
LinkDB
Position
LG04:12412105..12415710
AA seq 511 aa
MIMSPNEIANNAIRHALRALRQRHLVEEGAHAPAFLALSRPIISQSSEWKEKAEKLELEL
QQCYKAQSRLSEQLVVEVAEGRASKSSIEEKDATIDNLQQELTRARDECSQLKADLEMKI
KAMELAISESQELKAQLEAMTIKAKNTEAENNMLIDRWMLQKMKDAERLNEANALYEDMI
DRLKASGLEKLAQQQVDGVVRQSEEGAEYFVESTVPSVCKHSIRAHEGGCGTILFENNSG
KLISGGQDRTVKVWDTNTGSLSSTLHGCLGSVLDLAVTHDNRSVIAASSSNNLYAWDVGS
GRVRHTLTGHSDKVCAVDVSKISSRHVVSAAYDRTIKIWDLQKGYCTKTLIFPSNCNAVR
FSMDGQTICSGHMDGNLRLWDIQTGKLLSEVAGHSLAVTSLSLSRNGNTILTSGRDNLHN
LFDIRSLEVCGTLRASGNRVASNWSRSCISPDDNHVAAGSADGSVHVWSISKHDIVSTLK
EHTASVLCCSWSGLGKPLASADRNGIIFTWN
NT seq 1536 nt   +upstreamnt  +downstreamnt
atgatcatgtccccaaacgagatagcaaacaatgcgatcaggcacgctctcagggcgctg
cgccaacgccatctagttgaagaaggtgcgcatgctcccgcttttctcgctctctctcgg
cccatcatatcgcagagttcggaatggaaagagaaagcagagaagctggagttggagctt
cagcaatgttacaaggctcaatcgcgattgtctgagcaacttgtggtggaagtggctgag
ggtcgagcttctaaatcttcgattgaggagaaagatgcgacgattgataatctgcagcag
gagttaactcgagccagggatgaatgctcccagctaaaggcagacttagagatgaaaatt
aaagccatggaactggctatatctgagagccaagaacttaaagcacagcttgaagcaatg
acgatcaaagctaagaatacagaggctgaaaataatatgttgattgaccggtggatgctg
caaaagatgaaggatgcagaacgcctcaatgaggcaaatgcactctatgaagatatgatt
gaccgactcaaggctagtgggttagagaaacttgctcagcaacaggtcgatggtgtggtc
cgtcagagcgaagagggtgctgaatacttcgtagaatccaccgtaccctctgtatgcaag
catagtatccgtgcgcatgaagggggctgtggtactattttgtttgaaaacaattcagga
aagttgatcagtggggggcaggaccgaaccgtcaaagtgtgggatacaaatactggatca
ttaagttccactttacatgggtgccttggttctgttcttgatcttgcagttacccatgat
aatagatctgtcattgcagcaagcagttcaaacaacttatatgcatgggacgttggttct
ggaagggtgcgccatacgcttaccggtcactccgacaaagtatgtgctgtagatgtaagc
aaaatctcgagccgacatgttgtgagtgctgcttatgatcgcaccatcaaaatctgggat
ttacagaagggttactgcactaagaccctcattttccccagcaattgcaatgcagttcgg
ttcagcatggatggacagaccatttgttctgggcatatggatggaaatcttcggttgtgg
gatatccaaacaggaaaattgctcagcgaagttgctggacactcccttgctgttacatct
ctttctttgtcacgtaatggcaatacgatattgactagcgggagagataacttgcataat
ttattcgatattcggtctttggaagtctgcgggacattacgggcatctgggaatagagta
gcttccaattggagccgttcttgcatcagcccagatgacaaccatgttgctgctggttcc
gctgatggatctgtccatgtctggtcaatatcaaagcatgatattgtgagcactctgaaa
gagcacactgcctctgttctgtgttgttcatggagtgggcttgggaaaccccttgcgtct
gcggacagaaatggaattatatttacatggaactga

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