Cucurbita pepo subsp. pepo (vegetable marrow): 111793337
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Entry
111793337 CDS
T05351
Name
(RefSeq) nuclear cap-binding protein subunit 1-like
KO
K12882
nuclear cap-binding protein subunit 1
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03013
Nucleocytoplasmic transport
cpep03015
mRNA surveillance pathway
cpep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111793337
09122 Translation
03013 Nucleocytoplasmic transport
111793337
03015 mRNA surveillance pathway
111793337
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111793337
03041 Spliceosome [BR:
cpep03041
]
111793337
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
111793337
Spliceosome [BR:
cpep03041
]
Common components
Common spliceosomal components
Cap binding complex
111793337
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like
MIF4G_like_2
MIF4G
TPR_MLP1_2
DUF5798
Motif
Other DBs
NCBI-GeneID:
111793337
NCBI-ProteinID:
XP_023530943
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All DBs
Position
LG04:complement(8254359..8267046)
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AA seq
867 aa
AA seq
DB search
MSSWKSLLLRIGDKSPEYGTSSDFKDHIETCFGAIRRDLDHYGDEVLPFLLQCVEQLPHK
TPLYGTLIGLINLENEDFVKKIVDQTHKSFQDALNTGNCHRIRILLRFLTTLMSSKVLLS
TSLVVVFETLLSSAATTVDEEKGNPAWQARADFYISCILSCFPWGGAELVEQVPEELERV
MVGVEAYLSIRRHTVDTGLSFFEDAGEVEKTLNEKDFLEDLWGRIQALSSDGWKVDSVPR
PHLLFEAQLVAGKSHEFGSISCPEQPGSPSTPSGITYGKQKYDAELSYPQRIRRLNIFPS
SKFEDLQPIDRFVVEEYLLDVLLFFNGCRKECASFMVGLPVPFRYEYLMAETIFSQLLML
PQPPFKPIYYTLVIIDLCKALPGAFPAVVAGAVRALFEKIADLDMECRIRLILWFSHHLS
NFQFIWPWEEWAYVLELPKWAPQRVFVKEVLDREVRLSYWDKIKQSIENAPGLEELLPPK
GGPNFKFSTEDDGEKNEQHALSAELYNMVKGRAAAREVISWLDETVIPKHGFDVSLVVIV
QTLLDIGSKSFTHLITVLERYGQVISRICPDQDKQVLLISEVSSYWKNNTQMTAIAIDRM
MGYRLISNLAIIRWIFSPENIEQYHTSDRPWEILRNALCKTYNRISDLRKEISSLKKDIV
AAEEAVVKTQDELNAAESKLALVDGEPVMGENPVRLKRLKSYAEKAKEQEESIRDSLEAK
EALLARALEENETLFLSLYKSFSSILTERLPAASSVQTLQDLKSINPTDTNAMDLEEEPA
AMDMDNEDSRPEKSQVNGGTEHAYTVGENEQWCLTTLGYVKAFSRQYASEIWPHIEKLDA
EVLLAEDAHPLFRKAVYCSLRRSMDSI
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atgagcagctggaagagtcttcttcttcgaattggcgataagtccccggaatatggcacc
tcctccgacttcaaagaccatattgaaacttgctttggtgcgattaggcgggacctggat
cactatggagatgaagttttgcctttccttctacaatgtgttgaacaattgcctcataag
actcctttgtacgggacattgattgggttgataaacttggaaaatgaagacttcgtgaag
aaaattgtggaccaaactcacaaaagttttcaggatgccttaaacactggaaattgccac
aggatccgaattttgttacgctttctaactaccctgatgagcagtaaagtcctgctgtcc
acttctctagttgttgtttttgaaacattattatcttcagctgccacaacagtggatgaa
gagaagggaaaccccgcatggcaggcacgtgctgatttttacatatcttgcattctatcc
tgttttccctggggaggagctgaactggttgagcaagttcctgaagagctcgagagagta
atggtcggagtagaagcttacttaagcattcgaaggcataccgtggacactggtttatcc
ttttttgaggatgctggtgaagttgagaaaactcttaatgagaaggattttttagaagat
ttatggggacgcatacaagcattatctagtgatggatggaaagtggatagtgttccaagg
ccccaccttctatttgaagctcagctagttgctggtaagtcccatgaatttggaagcatc
agctgtccggagcaacctggttcaccttcaacaccttctggcattacttatggtaaacag
aagtatgatgcagagttaagttatcctcaaaggatacgtcggcttaatatatttccatca
agtaaatttgaggatctgcaacctattgatcgttttgtcgtggaggagtatcttttagat
gtgcttcttttcttcaatggctgtcgaaaggaatgtgcgtctttcatggttggtctccct
gtaccttttagatatgagtatcttatggcagagacaatcttctcgcagttactcatgcta
ccacaaccaccattcaagcctatttattatacgctggtcattattgacctttgtaaggct
cttcctggggcctttcctgcagttgtagctggtgcagttcgtgctctgtttgagaaaata
gctgatctagacatggagtgccgcatacggctaatactttggttttcacaccatctatca
aattttcaatttatatggccatgggaagaatgggcttatgttttagaacttccaaaatgg
gctccacagcgagtgtttgtcaaggaggttctggatagagaagttcgtctatcatactgg
gataaaattaagcagagcatcgagaatgcgcctggtttagaagagttgctacctcccaag
ggcggaccaaacttcaaattttctacggaagacgacggagaaaaaaatgaacaacacgca
ctttctgctgaattatacaatatggtgaaaggacgggctgcagcacgggaagtaatttca
tggctcgatgaaactgtaattcctaagcatggttttgatgtttcgctcgtggtgatcgtg
caaactcttctagatattgggtcaaagagtttcactcatttgataacagttttggagaga
tatggtcaagtgatttcaagaatatgccctgatcaggataagcaggtcttgcttatatct
gaagtgagttcttactggaagaacaatactcaaatgacggcaatagcaattgatagaatg
atgggttacaggttaatatccaatttggccattatcagatggatcttttctccagaaaac
atcgagcagtatcatacgtcagatcgtccatgggagatattaaggaatgcgttgtgcaag
acgtataatcgtatttccgatcttaggaaagaaatatcctccctgaagaaagatattgtt
gcagctgaagaagctgtagtgaagacacaagacgaattgaacgctgctgaatcgaagctc
gcacttgtcgatggtgaacctgttatgggagagaatcctgtaagactgaagcgattgaaa
tcctatgctgaaaaagcaaaagagcaggaagaatcgatacgagactcgttggaagccaaa
gaagctcttcttgcccgagcgctcgaggagaacgagacattatttctatccttatacaaa
agcttctccagtatattgaccgaacgccttccagcggcatctagcgtacaaacgctgcag
gatttgaagtctattaatccaaccgatacgaatgctatggacctcgaagaagaaccagca
gccatggatatggacaatgaagattcaagacctgaaaaaagtcaagtgaacggtgggaca
gagcatgcctacactgtaggtgaaaatgaacaatggtgtttaacaaccttaggatacgtc
aaggccttctcgagacaatacgcttccgagatatggccacacatcgagaagttggatgca
gaagtcttattagcagaagatgcacacccgcttttcaggaaagcagtctactgcagccta
cgtcgatctatggactcgatctaa
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