KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111793606
Entry
111793606         CDS       T05351                                 
Name
(RefSeq) protein transport protein SEC13 homolog B-like
  KO
K14004  protein transport protein SEC13
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03013  Nucleocytoplasmic transport
cpep04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    111793606
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    111793606
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cpep03019]
    111793606
   04131 Membrane trafficking [BR:cpep04131]
    111793606
Messenger RNA biogenesis [BR:cpep03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     111793606
Membrane trafficking [BR:cpep04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    111793606
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    111793606
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    111793606
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_WDR5 WD40_WDHD1_1st Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_TEP1_2nd WDR55 Beta-prop_RIG_2nd Beta-prop_Vps41 ANAPC4_WD40 WD40_Gbeta Beta-prop_WDR3_2nd Beta-prop_EIPR1 Beta-prop_IFT122_1st Beta-prop_WDR90_POC16_2nd NBCH_WD40 WD40_MABP1-WDR62_2nd EIF3I Beta-prop_WDR36-Utp21_1st Beta-prop_IFT140_1st Beta-prop_WDR75_1st WD40_RFWD3 Beta-prop_WDR36-Utp21_2nd Beta-prop_SCAP Beta-prop_DCAF12
Other DBs
NCBI-GeneID: 111793606
NCBI-ProteinID: XP_023531332
LinkDB
Position
LG04:complement(811813..813729)
AA seq 302 aa
MSSHKIETGHQDMVHDVQMDYYGKRIATASSDFTIKIISVSKNSDSQLLASLSGHKGPVW
QVAWAHPKFGSLLASSSYDGQVIIWKEGNQNQWVQAHVFSAHKSSVNSIAWAPHELGLCL
ACGSSDGSISVFIARSDGGWDNNQIEQAHSVGVTSVSWGPTTAPGSLIGSSSVDPVWKLA
SGGFDSTVKVWTLKDGSWRRDSSPALQMHTDWVRDVAWSPNLGLQKSTIASGSQDGTVII
WSVAKEGGKWEGIVMNDFKTPIWKVSWSLTGDLLAVADGNNTVTLWKEAVDGKWQQVTKV
EP
NT seq 909 nt   +upstreamnt  +downstreamnt
atgtcttcacacaagattgaaactggccaccaagatatggttcatgatgtacaaatggat
tactatggaaaacgcatagcaacagcttcctctgattttaccattaaaattattagtgtt
agcaaaaactctgattcacaactcttagcctcattgagtggtcataaaggcccagtttgg
caagttgcttgggcacacccaaagtttggttcattgttagcttccagctcttacgatggt
caagtgataatatggaaggaaggaaatcaaaatcaatgggtgcaggctcatgttttcagt
gcacataagtcttcggtgaactccattgcctgggcaccccatgaacttggcctctgcttg
gcctgtggatcatctgatgggagtatatcagtctttattgctagatctgatggtggctgg
gacaataatcaaattgaacaagcccactctgttggagtaacctcagtttcatggggccct
acgacggctccaggttccttaattggatccagttcagtggaccctgtttggaagctagct
tctgggggtttcgatagtacggtgaaagtgtggacgctaaaagatggaagctggaggagg
gactcctcccctgcccttcagatgcacactgattgggtaagggacgtggcttggtcgcca
aacctaggccttcaaaaatccaccatagcaagtggttcccaggatgggacagtgattatt
tggtctgttgcaaaggaaggagggaaatgggaaggcatagtgatgaatgattttaagact
ccaatctggaaggtttcatggtcattgaccggagacttattggctgttgctgatgggaat
aacactgttacattgtggaaagaagcagtcgatggtaaatggcagcaagttactaaagtt
gagccttag

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