Cucurbita pepo subsp. pepo (vegetable marrow): 111793736
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Entry
111793736 CDS
T05351
Name
(RefSeq) serine/arginine-rich SC35-like splicing factor SCL30A
KO
K12900
serine/arginine-rich splicing factor 10
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111793736
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cpep01009
]
111793736
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpep03041
]
111793736
Protein phosphatases and associated proteins [BR:
cpep01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
111793736
Spliceosome [BR:
cpep03041
]
Common components
Common spliceosomal components
SR proteins
111793736
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Motif
Other DBs
NCBI-GeneID:
111793736
NCBI-ProteinID:
XP_023531530
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Position
LG04:complement(8027496..8031599)
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AA seq
283 aa
AA seq
DB search
MRGRSYTPSPPRGYGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQF
GAIKDVYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLQGREITVVFAEENRKKP
SDMRARERGSGRFHDRRRSPPRYSRSPPQRHARRSFSPAPCHARSRSRSYDYASPPPRQR
AYSRSISPSPRGRRDSRERSYPRQPSRGRSYSRSPQLDGARSRSQSPAPRGGSRSPSPVR
GRRLSRSRSRSRSISRSRSPRHSPRHEEEYRSELNGGGRSPSR
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atgaggggtaggagttacactccatcgccgccaaggggttatggcaggaggggcaggagc
cctagccctaggggacgctatggtggtggacgtgggagagaccttcccactagccttcta
gttcgtaatcttcgccatgactgcaggcctgaggatcttcgtagacaatttggacagttt
ggtgctattaaggacgtatacctaccaaaggactattatactggagagcctcgtggtttt
ggttttgttcaatatgtagatcctgccgatgctgcagatgctaaacatcagatggatggc
tgtgttcttcaaggtcgggagataactgtggtatttgctgaggaaaacaggaagaagcca
tctgatatgagggcaagggagagaggaagtggacggtttcatgatcgtagaagatctcct
ccacggtattctcgttctcctcctcaacgccatgcaaggcgttctttttcaccagctcca
tgccatgcaaggtctcggtctcgcagttatgattatgcatcccccccaccaagacaaagg
gcgtactctagatccatatccccgtctccacgtggcagacgggatagtcgagagaggtcc
tacccacgacagccaagccgtggtaggtcatactcccgatccccacaacttgatggtgca
agaagtagaagtcagagtccagcaccacggggtggaagtcgaagtccaagccccgtgaga
ggccgaaggctgagtaggagcaggagcaggagcagaagcattagccggagccggagtcca
cgacatagtcctagacatgaagaggagtatagaagtgaactgaatggcggaggtaggagc
cctagtcggtaa
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