Cucurbita pepo subsp. pepo (vegetable marrow): 111793843
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Entry
111793843 CDS
T05351
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111793843
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111793843
03012 Translation factors [BR:
cpep03012
]
111793843
Enzymes [BR:
cpep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111793843
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111793843
Translation factors [BR:
cpep03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
111793843
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
ATPase
AAA_19
NACHT
Dicer_dimer
T2SSE
ABC_tran
NPHP3_N
Myosin_head
Motif
Other DBs
NCBI-GeneID:
111793843
NCBI-ProteinID:
XP_023531674
LinkDB
All DBs
Position
LG01:complement(7949881..7960500)
Genome browser
AA seq
1162 aa
AA seq
DB search
MKDRTPSSNGAVYVPPHLRLRSVVTRSDRSSAVSAVDCKLREAPASLLDSGTIPPPCLDS
RSQELLSMGKSRFNSVHYDFACDDGAPVDSWGFSPPANIDLWKRKLAQLLRDKEKQELVS
REKKDRHDFEQIAALASRMGLFSHLYAKVAVFSKVPLPNYRFDLDDRRPQREVSLPPGLL
RRVDEHLGEFLSQKSRFKCFLDNSVSRSSSSGSIATDEGLFEQPELQASSKAVMEKILWR
RSLHLRDQQHAWQSSLEGREMLEFRKKLPAYKEKDALLTTISQNQVIIISGETGCGKTTQ
VPQFILESEIESLRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKG
RDTHLLFCTTGILLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRL
ILMSATLDAELFSSYFGGAQIIYIPGFTHPVKTHFLEDILEMTGYRLTPYNQIDDYGPEK
TWKMSKQAPRKRKTQIASTVQDALMAADFNEYSLQTQESLSCWNPDCLGFNLIEFLLVSI
CESEMPGGILVFMTGWDDISSLKEKLQSHPLLGDPTRVMLLACHGSMASSEQRLIFTEPD
KGVRKVVLATNIAETSITINDVVFVLDCGKAKETSYDALNNTPCLLPSWISKVSAQQRRG
RAGRVQPGECYHLYPRSVFDSFFEYQLPEILRTPLQSLCLQIKSLKLGSISEFLSRALQS
PELLAVQNAIEYLKIIGAFDESENLTVLGRYLTMLPMEPKLGKMLIIGSIFNCLDPILSI
VAGFSVRDPFLTPLEKKDAAEAAKSQFSRDHSDHLAIIRAYEGWKEAERNFGGYDFCWKN
FLSVQSMKAIDSLRKEFFSLLRDTGLVDEHSNTYNAWSLDERLIRAVICCGLYPGVCSIV
HNEKSFSLKTMEDGQVLLYSNSVNARESRIPYPWIVFNEKIKVNSIFLRDSTAISDSMLL
LFGGSISKGDQEGHLKMLGGFLEFFMKPDVAETYQKLRMELEELIQMKLLNPTMDLHSHH
ELLSAIRLLISEDQCEGRFTFGRQILQQPSKKSTLAAAPNSVSRIESGPGGDNSKSQLQT
LLTRAGYAAPIYKTKQLKNNHFQATVEFNGLQIMGQPCTNKKNAEKDAAAKALEWLMGGN
QIGHDYINQMSMMLKRSKKDHN
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaccgtactccttcctccaatggcgccgtttacgtccctcctcacctccgtctc
cgttccgtcgttactcgttctgatcgttcctctgctgtttccgctgttgactgcaagctt
agggaggctcctgcctcgctgctcgattccggaaccattcctccgccttgccttgattct
cgatctcaagaactcctctcgatggggaaatcgcgttttaattccgtgcactatgatttt
gcctgcgacgatggcgctcctgtggatagctggggtttttcacctcctgctaacattgat
ttgtggaaaaggaagttagcacaacttttacgtgacaaggagaagcaagagttagtttca
agggagaaaaaagatagacatgattttgagcaaatagctgctttggcaagtagaatggga
ctttttagccatctatatgccaaagttgctgtttttagtaaggtcccgttgccgaactac
agatttgatttggatgatcggcgtccacagagggaggtttctttgcctcctgggttgctt
agaagagttgatgaacatctgggagaatttctctctcaaaagtctcggtttaaatgtttt
ctagataactccgtctctagatcaagcagcagtggtagcattgctacagatgaaggactt
tttgagcaacctgagctacaagcatctagtaaggctgtgatggaaaaaattctttggcgg
agaagtttgcatctgcgtgatcaacagcatgcttggcagtcatctctagaaggaagagaa
atgctggaattccggaaaaaactccctgcttacaaggagaaggatgcattattgaccaca
atctcacagaatcaggttattattatttcaggtgaaactggttgtggcaagactacgcaa
gttccccaattcattttggaatcagaaatagaatcactccgtggtgctgtttgcagcatc
atatgtacacagccaagacgaatatctgctatgtccgtctctgagagagttgcttctgaa
agaggcgagaagttgggtgaatctgttggttataaagtgcggctggagggtatgaaaggg
agggatactcatcttctcttttgcaccaccggcatcttgttgagaagactgctggttgat
agaaatttgaaaggcgtaactcatgttattgttgatgaaattcatgagcgtggaatgaat
gaagattttctgcttattgtcctgaaagatctccttcctcgtcgaccagaattgaggttg
attctaatgagcgcaactttagatgcagaacttttctcatcctactttggtggggctcaa
ataatttacattccgggattcacacaccctgtcaaaactcattttctggaggatattcta
gaaatgacgggttacagattaactccatacaatcaaatagatgattatggtccagagaag
acttggaaaatgagcaaacaagcaccaagaaagaggaaaacccagattgcctctactgtt
caggatgcacttatggcagctgattttaacgagtacagtcttcaaactcaggagtcttta
tcgtgttggaatccagactgtcttggatttaatctcatagaatttcttctagtcagtata
tgtgagagtgaaatgcctggaggtattcttgtttttatgactgggtgggatgacatcagt
tctctgaaggagaaacttcagtctcaccctttattaggagatccaactcgggtcatgttg
ttggcatgccatggctctatggccagttcagagcagaggttaatatttactgaacctgac
aaaggagtgaggaaggtagtgcttgcaacaaatattgctgagacaagtatcacgataaat
gatgttgtgtttgttctggattgtggaaaggcaaaagaaacatcgtatgatgctttaaac
aacactccttgtttgcttccctcttggatatccaaggtttctgctcaacaaagaagagga
agggctggtcgtgttcaacctggagaatgttatcatctataccctaggtctgtgtttgat
tcttttttcgagtatcagctacccgaaattttgagaacacctttacagtccctctgcttg
caaataaaaagcctaaagcttggaagtatatcagagtttctatctagggctttgcaatcg
ccagagctactagcggttcagaatgctattgaatatttaaagatcattggagcatttgat
gagagtgaaaatcttactgtcttaggtcgttatttgactatgctcccaatggaaccaaaa
ttgggaaagatgttgataataggttctatcttcaattgtttggatccaattttgtccatt
gttgctggcttcagtgtgagagacccttttctaacaccacttgagaagaaggatgctgca
gaggctgcgaagtcccaattttcacgagatcatagtgatcaccttgccattatccgggct
tatgagggatggaaagaagctgagaggaactttggtggttacgacttctgttggaagaac
ttcctttctgtacaatcgatgaaggctattgattcattaaggaaggagtttttctctttg
cttagagatactggtttagttgatgagcactcgaacacgtacaatgcttggagtctagat
gaacgactcatacgtgcagttatttgctgtggcctctatcctggagtttgctccattgtg
cataatgagaagtcattttctctcaaaactatggaggatggccaggtacttctctattcg
aactcagtcaatgctcgagagtcgaggattccatatccatggatagttttcaacgagaag
ataaaagtgaactccattttccttcgagattcaacagctatctctgactcaatgctgctt
ctctttggtggaagcatctcaaaaggtgatcaagagggacacttgaaaatgttgggcggt
tttttggaattttttatgaaacctgatgtagcagagacatatcagaaattaagaatggaa
cttgaagagcttatacagatgaagctactaaatcctacgatggacttgcactcccaccat
gagctcctatctgctatacgcttgcttatttcagaagaccagtgtgaaggtcgatttact
tttggccggcagatccttcagcaaccctccaagaaatcaactctggcagcggcaccaaat
tctgtttcaagaattgaaagtggacctggtggtgacaattctaagagtcagctgcagact
ttactcacgagggccggatatgctgcacccatctataagacaaagcaattgaagaataat
catttccaagcaaccgttgaatttaatggactgcaaattatgggacaaccttgtaccaac
aaaaagaatgcagaaaaggatgcagcagctaaggctctcgagtggttaatgggtggaaat
cagattgggcacgactatatcaaccaaatgtctatgatgctaaaaagaagcaagaaggat
cataactaa
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