Cucurbita pepo subsp. pepo (vegetable marrow): 111793983
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Entry
111793983 CDS
T05351
Name
(RefSeq) protein SMG7-like
KO
K14409
protein SMG7
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111793983
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111793983
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
111793983
mRNA cycle factors
Common to processing body (P body) and stress granule
111793983
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
111793983
NCBI-ProteinID:
XP_023531845
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All DBs
Position
LG04:8127901..8134735
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AA seq
978 aa
AA seq
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MAKMSASASASWERAQRLYEKNIELENRCRKSAQARIPSDSNAWQQIRENYETIILEDYA
FSEQHNIEYALWQLHYKRIEELRAHFSAALASAGSNNSQGVPTRLDRVPKIRLQFKTFLS
EATGFYHDLILKIRAKYGLPLGFFSEDADNRMATDKDGKKPADIKKGLISCHRCLIYLGD
LARYKGLYGEGDSKNREYTAASSYYLQAASLCPSSGNPHHQLAILASYSGDELVAVYRYF
RSLAVDSPFSTARDNLIVAFEKNRQSYSQLSGAAKASVVKESPIRFSGKGRKGEVKLATK
DSNAEPPKESVLSPQEPFKSFCIRFVRLNGILFTRTSLETFTEVLSLVNSSFSELLSSGP
EEELLFGTVAAENSLIVVRIVAILIFTVHNVNKETEGQTYSEIVQRAVLIQNAHIAVFEL
MGSILDRCSQLCDPLSSFFLPALLVLVEWLACCPEIAASSEVDDKQATARSKFWNRCISF
FNKLLSSGCVSLDDEDETCFFNLSKYEEGETDNRLALWEDLELRGFLPLLPAQTILDFSR
KHSGSDGNKEKVARVKRILAAGKALANIVKIDQEPIYYNSKVKRFCTGIEPQVPNDFVIP
SSSTMMPGPGNAMQGTQVEKTNNLAVGKSSSQLVLEGEEDDEVIVFKPLVAEKRIEMADA
LRSGYEGLQLARNSSGGDLRSYGGMTTSSEDIHLSSGFESSSQAPMAAANINTLHWQTIQ
SNASKWPLEQKACLVDSLQSLRLLENGHGMKSDLQNDISMFNPAVHSMPVKQTVSMNSDV
FYNDKKPLGVQVQSRNDGPVSFGGVIDPMTTGVFSSLQSGLRKHPVSRPVRHLGPPPGFN
HVTTKHANESLPGSEFRSENQTMDDYSWLDGYQLPSSTKDSANATHLTSHMNAQQIGGSN
VLSAAISFPFPGKQVPNVQSPIGKQKGWPDFQVLENLKQHNEQHLQPHQQLVNGGSQLFT
PLPEQYPGQSIWTGRYFM
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atggctaaaatgtctgcttccgcttctgcatcatgggagcgggctcaacgcctttatgaa
aagaatattgagttggagaatcggtgtagaaagtcagctcaggctcgaattccttcagat
tccaatgcatggcaacaaatacgggaaaattatgaaacaataatccttgaggattatgct
ttctctgaacagcacaatattgaatatgccttgtggcaactgcattacaagcgaattgag
gagctgagagcacatttcagtgctgctttggcttctgctggttctaacaattctcaaggc
gtgcctacaaggcttgacagagttccaaaaataagattgcagttcaaaacatttctttca
gaagctactggattttaccatgatttaatattgaaaatcagagcaaaatatgggcttcct
ttgggttttttctcggaggatgcagacaaccgtatggctacagataaagatggaaagaag
cctgctgacataaagaaaggtctcatttcttgtcatcgttgtttgatatacttgggtgat
cttgcacgctacaaagggttatatggggaaggtgattcaaaaaatcgggagtatactgca
gcctcaagttactacctgcaagcagcatcactttgtccatctagtggcaatcctcatcat
cagcttgctatattagcttcatactcaggagatgagctggttgctgtttatcgatatttc
cggagtctggcagttgattctccattttctactgccagagataatttgattgttgcattt
gagaagaaccgtcagagctattctcagctgtcaggggctgctaaagcttctgtggtgaag
gaatcacctattcgatttagtggaaaaggacggaaaggagaagtgaagcttgcaactaaa
gattctaatgctgaacccccaaaggagagtgtgctatctccacaggagccatttaaatcc
ttttgcattagatttgttcgtctaaatggaattcttttcacgcgcacaagcctagagacg
tttacagaggttctctcattggtaaatagtagtttctcagaacttttgtcttctggacct
gaagaggaactgctttttggaacagttgctgctgagaatagtctcatcgtagttagaatt
gttgcaattcttatattcacagttcacaatgtgaataaagaaactgaaggtcagacgtac
tcagaaattgtacaacgggccgttttgatacagaatgcacatattgcagtttttgagttg
atgggttctattcttgatagatgttcccagttgtgtgatcctttatcaagtttttttctg
cctgctcttctagttcttgttgaatggttggcatgttgtccggaaattgcagcaagcagt
gaagttgatgataaacaggctactgctagatcaaaattttggaaccgttgcatctccttc
ttcaataagcttttgtctagtggttgtgtgtctttagatgatgaggatgaaacttgcttt
tttaacctcagtaagtatgaagagggcgaaactgataatcggcttgcattatgggaggat
cttgaattaaggggattcttgccacttcttcctgcacagactatattggatttttcaagg
aagcattctggaagtgatggcaataaagaaaaagttgctcgcgttaaaaggattctggct
gcagggaaggctttagctaatatagtcaagatcgatcaagaaccaatatactacaattca
aaggtgaaaaggttttgtactggaattgaacctcaagtgccaaatgattttgtcattcca
tcgtcttctaccatgatgcctggtccaggcaatgcaatgcaaggaactcaagtagagaaa
acaaataacttggcagttgggaagtcaagttctcagctagttttggaaggtgaagaggat
gatgaagtaatagtctttaagcctctagttgctgagaagcgaattgaaatggctgatgca
ttgcggtcaggttatgagggtttgcaacttgcgagaaattcttctgggggtgatctgaga
tcctatggtggcatgacaacctcttctgaggatattcacctgtcaagtggttttgagtca
agttctcaagcacctatggctgctgctaatattaacactctccattggcaaacaattcag
tcaaatgcttctaagtggcctcttgaacagaaagcttgtcttgttgacagcttgcaaagt
ttgaggttattggagaatgggcatgggatgaaatctgatcttcagaatgatataagcatg
tttaatcctgcagttcactcgatgcctgtcaaacaaactgttagcatgaatagtgatgtc
ttttacaatgacaaaaagcccctaggagttcaagtacaatctaggaatgatggtcctgtc
tcatttggaggtgttatcgacccaatgaccacaggtgtattttctagccttcaatcaggg
ttgagaaaacatccagtaagtcgaccagttaggcatcttggacctcctcctggtttcaat
cacgttactactaagcatgctaatgaatcccttcctggttcagagtttagaagtgagaat
cagaccatggatgattatagctggttggatgggtatcagctgccctcttctacaaaagac
tctgctaatgctacacatctcacatctcatatgaatgctcagcaaattggtggtagtaat
gtattgagtgcggccatcagcttcccttttcctggcaaacaagttccaaacgtgcagtct
ccgataggaaaacagaaaggctggcctgatttccaggttcttgagaatctaaaacagcac
aatgaacaacatctgcagccacatcaacagcttgtgaatggtggtagccaactctttact
ccactgcctgagcaatatccaggacagtctatttggacaggtcgttacttcatgtga
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