Cucurbita pepo subsp. pepo (vegetable marrow): 111794484
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Entry
111794484 CDS
T05351
Name
(RefSeq) THO complex subunit 4A-like
KO
K12881
THO complex subunit 4
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03013
Nucleocytoplasmic transport
cpep03015
mRNA surveillance pathway
cpep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111794484
09122 Translation
03013 Nucleocytoplasmic transport
111794484
03015 mRNA surveillance pathway
111794484
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111794484
03041 Spliceosome [BR:
cpep03041
]
111794484
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
111794484
TREX complex
111794484
Spliceosome [BR:
cpep03041
]
Complex C
Other components
EJC/TREX
111794484
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
111794484
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
DUF5549
Btz
RRM_3
Motif
Other DBs
NCBI-GeneID:
111794484
NCBI-ProteinID:
XP_023532287
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Position
LG05:5963519..5966589
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AA seq
238 aa
AA seq
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MAAPLDMSLDDIIKNNKKSRSGISRGRGRGSGPGPVRRVPNRAANRTPYSAPKAPETTWQ
HDMFVDQGAGFPVQAGRASSIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK
SGRSKGTAEVVFSRRGDAAAAVKKYNNVQLDGKPMKIEIVGTNIATHAVGPPAAVNPFEN
FNGVPRRQQGRGGLPSRQRGGRGSGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
NT seq
717 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcctttggatatgagtctcgatgatatcataaagaacaacaaaaaatccaga
tccggaatttctagaggtcgcggtagagggtccggaccgggtcccgtccgtcgagtcccc
aatcgcgccgctaatcgcacaccttattccgctcccaaggcgccggagacgacctggcag
catgatatgtttgtcgatcagggcgcgggtttccccgtgcaagctggacgtgcctctagc
attcagactggaactaagctctacatatctaatttagattatggtgtctctaacgaagat
attaaggaacttttttctgaggtcggagatatgaaacgctacggtatccattatgacaaa
agtggcagatccaagggaacggcggaagtagttttctcacgacgaggagatgctgctgcg
gctgtcaagaagtacaacaacgtgcagctagatggaaaaccgatgaagatagagatcgtt
ggaactaatattgccactcatgctgttggtcctcccgctgctgtgaaccctttcgaaaat
ttcaatggggttcctagaaggcaacaaggtaggggtggtctgccatcacgtcaacgtggt
ggtcgtggttctggaagggggcgtgggcggggaagaggcccaagtgaaaaagtatctgcc
gaagatcttgatgccgacttggaaaagtatcatgctgagtcgatgcagataaattag
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