Cucurbita pepo subsp. pepo (vegetable marrow): 111794543
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Entry
111794543 CDS
T05351
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03030
DNA replication
cpep03410
Base excision repair
cpep03420
Nucleotide excision repair
cpep03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
111794543
03410 Base excision repair
111794543
03420 Nucleotide excision repair
111794543
03430 Mismatch repair
111794543
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpep03032
]
111794543
03400 DNA repair and recombination proteins [BR:
cpep03400
]
111794543
DNA replication proteins [BR:
cpep03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
111794543
DNA repair and recombination proteins [BR:
cpep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
111794543
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_19
Rad17
RCF1-5-like_lid
AAA_30
PTCB-BRCT
AAA_22
BRCT_2
AAA_5
AAA_assoc_2
AAA_18
Sigma54_activ_2
AAA_24
AAA_33
Zeta_toxin
nSTAND3
RuvB_N
AAA_17
AAA_28
Gp44_lid
RNA_helicase
RsgA_GTPase
DNAX_ATPase_lid
Motif
Other DBs
NCBI-GeneID:
111794543
NCBI-ProteinID:
XP_023532343
LinkDB
All DBs
Position
LG05:2643018..2656927
Genome browser
AA seq
976 aa
AA seq
DB search
MADIRKWFMKAHDKDNGSASKHAKPDSSSNEKSAAAELQSGKAELSGGESTGRRITSKYF
ASEKQKSKDTTETEELPIKRKSPQDAKESPAKRRSQKDSKESLKVPPLQKLNKIDDNDDD
AVISSSRKNLSDVTPNKKLKSGSGKGITQKPVKIEESDDEEAEGTESSRKQPSGRGRGGR
GSSAATVGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLER
EEAEDLIKRHGGRITGSISKKTNYLLCDEDIGGRKSSKAKELGTAFLTEDGLFDIIRASG
TKAPPRQDSKKSVVKSVESPTGKSSLKVQAKTCKDLSAGAGASPAKQKRRTVEFSSLTWT
EKYKPKVPNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKAILLCGGPG
IGKTTSAKLVSRMLGYEAIEVNASDNRGKSDAKIQKGISGSNANTIKELISNSSLHFRTN
QPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKSSKIPIICICNDRYSQKLKSLVNYCLI
LSFRKPTKQQMAKRLSQVANAEGLQVNEIALEELAERVNGDIRMALNQLQYLSLSMSVIK
YDDIRQRLLGSMKDEDISPFTAVDKLFGFNSGKLRMDERIDLSMSDMDLVPLLIQENYIN
YRPSSVSKDDNGIKRMDLMARAAESIADGDIINVQIRRHRQWQLSQSSSIASCVIPASLL
HGQRETLEQGERNFNRFSAWLGKNSTFGKNMRLLEDLHVHILASRESCSRREHLRVENLT
LFLKRLTEPLHTLPKDEAVKMVVDFMSLYSISQEDFDTVMELSKFQGRKNPLDGVAPAVK
AALTKAYKEARKTQMVRTADLITLPGIKKAPKKRIAAMLEPAEDTVEGNGGDALAESDDE
NSLDNDDTEDSTNAEKKLQLELQNLKKEGMEVQLDLKGVENSNAKKPGGRGRGGGSQASE
KKGGGRGSGSATKRKR
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atggcggatattagaaaatggttcatgaaagcgcacgataaagacaatggcagtgcgtca
aagcatgcaaaacctgattcaagcagtaatgagaaatccgccgcagctgaactacagtcc
ggaaaagcagagctaagtggtggggaaagtactggcagaaggataactagcaagtatttt
gcctcagaaaagcagaagtctaaggatacaacagaaacagaggaactccctatcaaacgg
aagtctccacaggatgctaaggagtcaccagccaaaagaaggtcccaaaaggatagtaag
gaatcattgaaagttccacccctacaaaaattaaacaaaattgatgacaatgatgatgat
gctgttatttcaagttctagaaagaacttgtctgatgtcactcccaataaaaagttgaag
agtggttctggaaagggaattacacagaaaccggtaaaaattgaagagagtgatgatgag
gaagctgagggcactgagtcttctcggaagcagcctagtggaaggggtagggggggcaga
ggttcatctgctgcaaccgttggtggtagaggcagaggtggtgggcggggtggatttatg
aattttggggaaaggaaagatcctccacacaaaggagaaaaggaagtccctgaaggagct
cctgactgtttagccggtttaacttttgtaatcagtggaacccttgacagtttggaacga
gaagaagcagaagatttgattaaacgccatggtggtagaataactggatccatcagcaaa
aaaacaaattatctactatgtgatgaagatattggtggccgaaaatcttccaaagcgaaa
gagctgggaactgcttttctcactgaggatggcttatttgacattatccgtgcatcaggc
acaaaagctcctccaaggcaagattctaaaaaatctgtggttaagtccgtggaatctcca
acagggaaaagttccctgaaagtacaagcaaagacatgcaaagatttgtctgctggtgct
ggtgcttcacctgctaagcaaaaacgccgaacagttgaattttcttccctaacatggaca
gaaaaatataagccaaaggttccaaatgacattatagggaatcagtcgctggtcaaacaa
cttcatgattggttggcacattggaacgagaacttccttgatggtggaagcaaaaagaag
ggtaaaaagctcaatgattctggtgccaaaaaagcaatcttgttatgtggaggtcctggc
ataggtaaaactacatcggctaagttggtcagccggatgcttggttatgaggctatagag
gtaaatgccagtgacaatcggggtaaatcagatgcaaaaattcaaaagggaatcagcgga
agcaatgcaaatactataaaggagcttatcagcaattcatctttgcatttcagaacgaat
cagccaaaacatcccaaaactgtgttgattatggatgaagtagatggaatgtctgctgga
gataggggtggagtcgctgatcttattgcaagcattaaaagctccaaaattccaattatc
tgcatctgtaatgaccgctacagccagaagttgaaaagccttgtgaactattgtctgatt
ctcagttttagaaaacctacaaaacaacagatggcaaaaagattgagtcaagttgcaaat
gcagaaggacttcaagttaatgagattgctcttgaggaacttgcagaaagagtgaatggg
gatatacgtatggcactaaatcagttgcagtacctgagtctgtcaatgtctgttattaaa
tatgatgatattcgccaacgacttctgggcagtatgaaagatgaagacatctcgccgttc
actgctgttgataagctgtttggttttaattctgggaagttgaggatggatgaacgtata
gacctcagtatgagtgatatggatctagtccctcttcttattcaggaaaattatattaat
tatagaccaagctctgttagtaaggatgacaatgggatcaaacggatggatttgatggcc
cgtgcagctgaatctattgcagatggggatataatcaatgtacagattcgaaggcatcga
cagtggcaactctctcaaagtagctcaattgcttcttgtgtaatcccagcttcattattg
catgggcaaagagaaacgcttgagcagggagagcgtaattttaatagatttagtgcatgg
ctgggaaaaaattctacttttggaaaaaatatgcggcttttggaggatttgcatgttcac
attcttgcttctcgcgagtcctgttctaggagggaacacctacgagttgagaaccttacc
ctatttctgaagaggttgactgaaccactgcacacgctgcctaaggatgaagctgttaaa
atggttgtagattttatgagtctatattcgatcagtcaagaggattttgatactgttatg
gagttgtcaaaatttcagggtcgtaagaatccattggatggcgtggcccctgctgtcaaa
gctgctctaacaaaggcatataaagaagcaagaaagacacagatggtgcggactgcagac
ctcattacacttcctggaattaaaaaggcccctaagaagcgaattgcagcaatgctagaa
ccggctgaggatacagtcgagggcaatggtggagacgcgttggcagaaagtgacgatgag
aactctttggacaacgacgacacagaagactcaacaaacgctgagaagaagctgcaactg
gaacttcaaaacttgaagaaggaaggaatggaagtgcagctagatttgaaaggtgtggag
aattcaaacgccaagaaacctggtggcagaggaagaggaggtggttcccaggcttcagag
aagaaaggtggggggcgaggttcaggatctgccacaaagaggaaaagatga
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