Cucurbita pepo subsp. pepo (vegetable marrow): 111794578
Help
Entry
111794578 CDS
T05351
Name
(RefSeq) SNF2 domain-containing protein CLASSY 4-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
111794578
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpep03400
]
111794578
DNA repair and recombination proteins [BR:
cpep03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
111794578
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
111794578
NCBI-ProteinID:
XP_023532390
LinkDB
All DBs
Position
LG05:1169761..1175686
Genome browser
AA seq
1289 aa
AA seq
DB search
MVDSVAKRTRLRRAMAREEHLEQRKKRRKKSRDSASDNVRGQFSSGGFRDRGKWVNASEN
CSVNRRMEVEKVAISVDSEEESVEEIDAVMFGREGGDSVTFVGSESSGLKNVKGFGTKGN
VDVIDLENEVIFLDEEGFDSVNSNCSISKSAAAAAKGGDFTCLDLDNEDGSSGLISSGKG
KGALEISPNKSMGESNCLNSNCFESGGCSYSTEPACCPDDAVDESTESGASSNEEESDEL
SDENYELEESEESISESSSSSENEENNGSYCVEAGSRRERKESRKRIEVIEGGLKRRKAY
GLDILADLDKDDHNFDYENGNVKVREQVNCVARRTRSRYVWKVKKMNNDLGTVSQPLCID
EEGSDFEGNEKEIHSSSRHDSGDSCDSDSDSDRGRGRGHGRACDRDHDHDHDRGRGRGRG
RDSDRDRTADDGIYKPRAWSSGIKKRTQFNNQSDDVILSEKNDDHTNKVENFHGGSKLWD
SKSSPETDKHKRSEDCEDFQKVHPKNFHEFDSIIKTKGHSACKNLDVFNILVDSIVADKE
LPSDDLDSRTSPLSHCPEMPLPLKFNFRFEEPHLPEKLEEEKEMDKLWAELDFALRSSEI
GAVDSNTVENEDAFLSKLDQADLCLRGDHQLILDEQIGLRCTRCSYVKLEIKDILPSFGT
NPSGKSQKKESGSFEHVRFDDLQQEFDRDPHDISDSRYHVGRTVWDIIPGIRESMYPHQR
EGFEFIWENIAGGIYLDELRKINGLNKGSGCIVSHAPGTGKTRLTIVFLQTYMELNPTCR
PIIIAPSSMLLTWEEEFLKWKVGIPFHNLNKRDFTLKENFSALKFLMQASPSGQTVENVR
LVKLLSWKKEKSILGVSYRLFERLAGVRKNSKCDKVRNVLLELPDLVVFDEGHIPRNDDS
LIWMALSKIKTERRIILSGTPFQNNFTEFSNTLRLARPNFADVCKSGDNECPDKKRGRPK
HISRGKWDLLISSIDRTSENLPESPELREIRALISPFVHVYRGNILREKLPGLRKSIVIL
RPAELQKRYLESIVGNNSFEVEYAESLISVHPSLKLKCDKEDFDTDKEMLEKVRLNPELG
VKIQFLLEIIRLSEALNEKVLVFSQYIEPLSFIDENLKFHFNWNEGVEVFHMDGKRDIKK
RQALINTFNDPTSEVRVLLASTKACSEGINLVGASRVVLLDVVWNPSVERQAVCRAFRLG
QKKVVYVYHLITSGTREEEKYSRQMKKDRLSELVFSPEQSSNQVKVSSTDLDDRILEAVL
QHEKLKNIFERIAYQSKQSSMNGNFGLAD
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
atggtggactccgtagcgaagagaacgaggctgaggcgagcaatggctagagaggagcat
ttggagcagaggaagaagcgtaggaagaagagcagggattccgctagtgacaatgttcga
ggtcaattttcgagcggaggatttcgtgatcgaggcaagtgggttaatgcttctgaaaat
tgtagtgttaatcgtcgaatggaggtagaaaaagtggctataagtgttgatagcgaggag
gagagcgtcgaggagattgatgctgttatgtttggtagagaaggtggggattcggtcaca
tttgtaggttctgagagttcggggttgaagaatgtgaaaggatttggtacgaaggggaat
gttgatgtaatcgatttagagaatgaggtgatttttcttgacgaggagggttttgattct
gtgaattcgaactgttcgatttctaagtcagctgctgctgctgcgaagggcggggatttc
acttgccttgatttggataacgaagatggtagcagtggcttgatttcatctggcaaggga
aagggtgctttagagatatctccaaataaaagcatgggagaaagtaattgcttgaattct
aattgctttgagagtggaggttgctcgtacagcactgagcccgcgtgttgtcctgatgat
gctgttgatgagtccactgaatcgggagcatcatcaaatgaagaggagtctgacgaattg
agtgacgagaattatgaattagaagaatcagaagagtcaatttcagagtcctctagtagt
tcagaaaacgaggaaaataatggaagttactgtgtagaagcaggaagtagaagggaaaga
aaggaaagcaggaaaaggatagaagttattgaaggtggactaaagagacgtaaagcttat
ggattggacatattggctgatcttgacaaggacgatcataactttgattacgaaaatgga
aatgttaaggttcgtgagcaggtgaattgtgttgcacgaagaacccgttcacgctacgtt
tggaaggttaaaaagatgaataatgatcttggaactgtcagtcagccactctgtattgat
gaggaagggtcagactttgagggcaatgagaaagaaatacattcttcgtcaaggcatgac
agtggagattcttgtgatagtgacagcgatagcgatcgtggtcgtggtcgtggtcatggt
cgagcttgtgatcgtgatcatgatcatgatcatgatcgtggtcgtggtcgtggtcgaggt
cgtgatagtgatcgtgatcgtactgctgatgatggaatttacaagccaagagcctggagt
agtggtattaaaaagagaactcagttcaacaatcaaagtgatgatgttatcttatcagaa
aaaaatgatgatcatacaaacaaggtcgagaattttcatgggggtagtaaactttgggat
agtaaaagttctcctgaaacagataaacacaaacggagtgaagactgtgaagattttcag
aaggttcacccaaagaatttccatgagtttgatagtattatcaaaacaaaaggccacagt
gcctgcaaaaatcttgatgttttcaatattcttgtagattccatagttgcagacaaagaa
ctgccttcagatgatttagattctcgtacaagtccactctcccattgtcctgagatgcct
cttcctttgaagttcaattttagatttgaggaaccacatcttccagagaagttagaggaa
gaaaaagaaatggataaactgtgggctgagcttgactttgctctcagatccagcgagatt
ggtgcggtggattctaatacagttgaaaatgaagatgcctttctttcaaagcttgaccaa
gcggatctttgtcttcgtggggatcatcagctgatacttgatgaacaaatcggacttaga
tgcacacgttgttcatatgtcaaattggaaatcaaagatattctaccttcttttggtaca
aatccatctggaaagtcgcagaagaaggaatctggctcatttgagcatgttagatttgat
gaccttcaacaggaatttgatcgtgacccccatgacatatctgattcacgatatcatgtt
ggacgtacagtgtgggatatcattcccggtataagggagagcatgtatccacatcagcgt
gaaggctttgaatttatttgggaaaatatagctggtggaatttatcttgatgagttaaga
aaaataaacggcttaaacaaggggagtggatgcattgtatcacatgctcctggaacagga
aaaactcgtctaacaattgtttttcttcagacatacatggaactaaatccaacgtgccgg
cctataattattgcacctagcagcatgctccttacctgggaagaggagtttttgaagtgg
aaggttggcattccctttcataacctgaacaagcgagattttactctcaaggagaatttt
tcagctcttaagttcttgatgcaagcttctccatcaggacaaactgtggagaatgtacgg
cttgtaaaactgctttcctggaaaaaggagaaaagcattttgggagttagttacagattg
tttgagagacttgcaggagttcggaagaattcgaaatgtgataaagtaaggaatgtcctt
ttggagcttcctgatcttgttgtctttgatgaagggcacataccacgcaacgatgatagt
cttatttggatggccttgtctaaaattaaaacagaaaggcgcatcattctctccggaaca
ccattccagaataattttactgagttttctaatacactaaggttggcgaggccaaacttt
gcagatgtatgtaagtctggagataatgaatgcccagataagaagcgtggacgcccgaaa
catatctcaagaggaaaatgggaccttttgattagttccattgacagaacttctgaaaac
ttgccggaaagtccggaattgagagaaatcagagccttgatcagtccgtttgtgcatgta
tacaggggcaacattctacgagagaagcttccagggttgaggaaatctatagttatacta
cgaccagcagagctgcagaaaaggtatcttgaaagcatagtagggaacaattcttttgaa
gtggaatatgctgagtccttgatatccgtacacccttccctgaaactgaaatgtgataaa
gaagattttgataccgacaaggaaatgttagagaaggttagattgaatcctgaactagga
gtgaaaatacagtttctcctggaaattatacgtctgagtgaagctttgaatgaaaaagtt
ttggttttcagccaatacattgaaccattgtcctttatagatgagaatcttaagtttcat
tttaattggaatgaaggggtagaggtatttcatatggatggaaagcgtgatataaagaag
cgacaagcattgataaatacatttaacgatccgacaagtgaggttcgggtgttgcttgca
tcaacaaaggcttgctcagaaggtataaaccttgttggggcttcaagggtagttttactt
gatgttgtatggaatccttcagtggaaaggcaagctgtatgccgtgcatttagacttggg
cagaaaaaagttgtttatgtgtatcatctcattacctctgggacaagggaagaggaaaaa
tacagtcgacaaatgaaaaaagatcggttgtctgagttagttttctctcctgaacagagc
agtaatcaagtaaaagtatcatccacagatctggacgacagaattttggaagcagttctt
caacatgaaaagcttaaaaatatattcgaaaggatagcgtaccaatcaaagcagtccagc
atgaatgggaattttggcttggcagactag
DBGET
integrated database retrieval system
