Cucurbita pepo subsp. pepo (vegetable marrow): 111794837
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Entry
111794837 CDS
T05351
Name
(RefSeq) transcription initiation factor IIF subunit alpha-like isoform X1
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
111794837
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpep03021
]
111794837
Transcription machinery [BR:
cpep03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
111794837
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
DZR_2
Ribosomal_S27e
Motif
Other DBs
NCBI-GeneID:
111794837
NCBI-ProteinID:
XP_023532767
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Position
LG05:complement(558100..562262)
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AA seq
540 aa
AA seq
DB search
MPLDLLLKPSCSGCGSTTELYGSNCKHMTLCLSCGKTMAENKGKCYDCGATVTRLIREYN
VRASSSSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKEGLQGRQLTDALREKYKNRPWLL
EDETGQSQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYNFNKVAQYKQLTLEEAEEKM
KNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGATGRGRRKPTSDDNEGNVSDRG
EGDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGDHDLDDDDIEKGDDWEHEEIFTDDDET
TAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLKRTGGLNDSDG
EDDDDDDDDDAEEESGGTPVAPSKQKDAVKEEAAANSPSKPAPSGSAKGTSSTAKTAKGK
RKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEE
IRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgccattggatttgctgctgaagccgtcgtgcagtggatgcggatccacgacggagttg
tatgggagcaattgcaagcacatgacgttgtgcttgagctgtggcaaaactatggctgag
aataagggcaaatgttacgactgtggtgctactgttactcgcttaataagagaatacaat
gttcgagcgagttcaagtagtgacaagaactacttcattggtcggttcatgagtgggctg
ccaaacttttcgaagaaaagaaatgccgagaataaatggtctctttacaaggaaggtcta
caaggacgccagcttactgatgccctgcgggaaaagtacaagaatagaccctggcttttg
gaagatgaaactggccaatctcaattccaaggacatctcgagggttcacaatcagcaaca
tattacttgcttgtattgcaaggaaaggaatttactgccattcctgcaggttcttggtac
aacttcaacaaagtggcacagtataagcaacttacattggaggaggcagaagagaaaatg
aagaaccgaaagaagacagcagatggatatgaaagatggatgatgaaagctgcaagtaat
ggtcctgcggcatttggtgaagttgagaagtttgacgataaagatagtgttggtgctact
ggcaggggacgcagaaaacctactagtgatgataatgaaggtaatgtttcagatagggga
gaaggagatgaagaagaagaggcagcaaggaagaacagattgggactcaacaaaaagggt
ggtggtgatgatgatgatgaggaaggccctaggggaggtgaccatgacttggatgatgat
gatatcgagaaaggagatgattgggagcatgaagagatttttaccgatgatgatgaaact
actgctccagatcgtgaagaaagggaggatttagcccctgaagttccagcacctccagag
attaaacaggatgaagaagacgaggatgaagaaaatgaaggagagggggggctgagcaaa
tctgggaaagagttgaagaaattgcttaaacgtactggggggcttaatgattcagatgga
gaggatgacgacgacgacgacgacgatgatgcggaagaggagagtggtggcactccagtt
gcgccttcaaagcagaaggatgcagttaaagaagaagctgcagccaacagtccctcaaaa
ccagctccttctggatctgctaagggaacctcttctactgcaaagacagcaaaggggaaa
agaaaaaatggcgaggatgtgaaaccatccagtgcacctccaaagaaaatgaaaacagag
acggaatcaaagtcgacagatgaaggcgtgtctacttctagaagtacggcctcaaaaggt
gcagcagcatcagtcaaaacagaaccagcatccgcttctggacctgttactgaggaagaa
attagggctgttttgcgacaaaggacacctgtaactacacaggatcttgttgcaaaattc
aaagcaagactacgatctcacgaggacaagaatgcttttgctgaaatactgaggagaatt
tcaaggattcaaaagacgaatggaggaccaagctatgttgtgttgagaaaacctgaagac
tag
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