Cucurbita pepo subsp. pepo (vegetable marrow): 111794838
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Entry
111794838 CDS
T05351
Name
(RefSeq) probable pectate lyase 8
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep00040
Pentose and glucuronate interconversions
cpep01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
111794838
Enzymes [BR:
cpep01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
111794838
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
111794838
NCBI-ProteinID:
XP_023532769
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Position
LG05:complement(547855..551345)
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AA seq
434 aa
AA seq
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MAVSLRLHFSMASSLLFLLLHILFVHSSFAGDERLQSFNSSSMADWNVKNEHAVDNPEEV
ASMVDSSIRNSTERRNLGFFSCGTGNPIDDCWRCDPRWQLRRKHLANCGIGFGRNAVGGR
DGRYYVVSDPGDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGR
GANVHIAYGACITIQFVTNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDGVSIFG
SSHIWIDHNSLSSCADGLIDAVMGSTAITISNNYFTHHNEVILLGHSDSYVRDKQMQVTI
AYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSADPTINSQGNRYLAPANPFAK
EVTKRVDTWNGEWKHWNWRSEGDLLLNGAYFTPSGAGAAASYARASSLGAKSSSLVGTIT
STAGALSCRRGYRC
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atggcggtttctctcagactacacttttcgatggcttcttcattgctctttcttcttctc
cacatcctcttcgttcattcaagttttgctggagatgagagattgcagagcttcaattct
tcatcaatggcggactggaatgttaagaacgagcatgctgttgataatccagaggaagtt
gcatcaatggtcgattcgagcattcgcaacagcacagagaggaggaatttagggttcttc
tcttgcggaacaggaaacccaattgatgattgttggcgatgcgacccacgttggcaactt
cgccgcaagcacctagcaaattgcggcattgggttcggtcgcaacgctgtcggtggccgc
gatgggagatattatgtcgtttcagatcctggcgatgacgatcctgtcaatcccagacca
ggaactcttcgccatgccgtgattcaagacaggccattgtggattgtgttcaaaagagat
atggttataactctaaaacaagaactcatcatgaacagcttcaaaacaatcgatggccgt
ggtgctaatgtccacattgcttatggcgcttgcattacaatccaattcgtaaccaatgtc
attattcatggtctgcatattcatgactgcaagccaacgggtaacgccatggttcgaagc
tcccctagtcattatggatggaggacaatggccgatggggatggggtttctatttttggg
tcgagtcatatttggattgaccataactctctttctagctgtgctgatgggctcatcgac
gctgtgatgggatcaactgccattaccatttctaacaattacttcacccaccacaacgag
gtgatacttttgggacacagtgactcatatgtaagagacaagcaaatgcaagtgaccatt
gcttataaccattttggtgaaggtctcatccaaagaatgccaaggtgtagacatgggtat
ttccatgtagtaaacaatgactacactcattgggtaatgtatgccatcggtggaagtgct
gatcccaccattaatagccaaggcaacagatatcttgcccctgccaacccttttgccaaa
gaggtcactaagagagttgatacgtggaatggtgaatggaagcactggaattggagatca
gagggagatcttttgctaaatggagcctatttcactccatcaggagctggggcagcagcc
agttatgcaagagcttcaagcttaggagccaaatcctcttccttggtgggcaccattact
tcaactgcaggtgccctttcttgtcgcaggggataccgttgttaa
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