Cucurbita pepo subsp. pepo (vegetable marrow): 111794936
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Entry
111794936 CDS
T05351
Name
(RefSeq) DNA topoisomerase 6 subunit B isoform X1
KO
K03167
DNA topoisomerase VI subunit B [EC:
5.6.2.2
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpep03032
]
111794936
Enzymes [BR:
cpep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
111794936
DNA replication proteins [BR:
cpep03032
]
Prokaryotic type
DNA Topoisomerases
111794936
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Topo-VIb_trans
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
111794936
NCBI-ProteinID:
XP_023532908
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Position
LG05:3052691..3058944
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AA seq
673 aa
AA seq
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MEIGGGSESPDEPKKGKSKTPRKPKESILKQKSPAEFFAENKNIAGFDNPGKSLYTTVRE
LVENSLDSAESISELPVVEITIEEILKTKFNSMIGLVDRERVDAELYDDYETAKAREKRL
AKEARAQEIQAKNASLGKKGREPAASKGMKGRGEASFYRVTCKDNGRGMPHDDIPNMFGR
VLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMKGQNYTSFCRLDIDIHRNI
PHIHVQEKRDNKDLWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSDTP
DKNITIRFSRRTDVMPPVPQETKHHPSAVDLLLIKRLIAETAKQSLLQFLQHEFVNLGKS
YAERLIGEMGPEFCPKMSVKSLTSQQIVRIHQLFRQAKFDDPSGDCLSPAGEYNLRLGII
KELHPDMVATYSGSAQVFEGHPFIVEAGVSIGGKDVKQGLNIFRFANRIPLLFEQGADVV
TRTALKRINWSSYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDISEIASAVKSAIQQ
CCIQLKSKIVKKIQAREQQERKRNLSRYIPDATNAVYNVLKEMAHVHASKKKRHDGENAE
ILSKVSARVITNETLRDKLAQHVEQVDHEMAMEYATQSGASAESKEEIYIQSLDATDNFT
DFKSPLFVFRLVH
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggagattggaggtggctctgaaagtcccgatgaacctaagaagggcaaatcaaaaaca
cccaggaagcccaaagaaagcatcctcaagcaaaaatcaccagctgagttctttgcggag
aacaagaacattgctgggtttgataatcctgggaagagcctctacactaccgtgagggag
cttgtggaaaattcccttgattctgcagagtctatatctgagcttcccgtggtagaaatt
actattgaagagatattgaaaaccaagtttaattctatgattggtctggttgatcgagaa
cgtgttgatgcggaactttatgatgattatgagacagctaaggctcgtgagaaaagatta
gcaaaagaagctcgtgctcaagaaatacaagcaaaaaatgcttcccttgggaagaaaggc
agagagcctgcagcctcaaagggtatgaaaggccgtggtgaggcttcattctaccgggtg
acttgcaaagataatggaagaggaatgccacatgacgacataccaaatatgtttggccga
gtactttctggaaccaaatatggcttgaagcaaacccgtggaaagtttggtctgggtgca
aagatggcattaatttggtctaagatgagtaccggtcttcctattgagatctcatcatca
atgaagggtcaaaattacacttcattctgccgcttagatattgatatccatcggaacatt
cctcacattcatgtccaagaaaaacgtgataacaaggatctatggcatggagctgaaatt
caagttgtaattgaaggaaattggacaacttaccggtcgaaaattttgcattacatgcgg
cagatggcagttatcacaccttatgctcaatttcttttcaaatttgtttccgatacgccc
gataaaaatatcacaattagattttctcgaagaacagatgttatgcctccagttcctcaa
gagacgaaacatcatccatctgctgttgatttactattgataaagcgccttattgcagaa
acagccaaacagagccttttacagtttctccagcatgaatttgtaaacttagggaaatca
tatgctgagcgattaattggagaaatgggcccagaattttgccccaaaatgtctgttaag
tctctgacatctcagcaaatagttcgtattcatcagttgtttcgtcaagccaaatttgac
gatcctagtggtgattgtcttagtcctgctggggagtataatcttcgtcttggaattata
aaggaactgcatcctgacatggttgctacttattcaggcagtgctcaagtttttgaagga
catccattcattgttgaagctggtgttagcattggaggcaaagatgtgaaacagggtctg
aacattttccgatttgcaaatcgtataccccttctttttgagcaaggtgcagatgttgtg
actaggactgcccttaagaggatcaattggagtagttataagatcaaccaaactcaagat
aagattggtgtgttcgtgagtattgttagtactaagatccctttcaagggaactggaaag
gagtacattggagatgacatatctgaaatagcatctgctgtcaagtctgccattcagcag
tgctgcattcagttgaaaagcaaaatagtgaagaaaatacaagcacgtgagcagcaggaa
aggaaacgaaatttgagcagatacatcccggatgcaacaaatgccgtgtataatgttttg
aaagaaatggctcacgtgcatgcatcgaagaagaaacgccatgacggtgagaatgccgaa
atactcagtaaagtatctgctcgcgtgattacaaatgagactttgagggataaacttgca
caacatgttgaacaggtggaccacgaaatggcgatggaatatgccacacaaagtggagca
agtgcggagtccaaagaagaaatatatattcagtcattggatgctacggataacttcaca
gactttaaaagccctttgtttgttttcagacttgttcattaa
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