Cucurbita pepo subsp. pepo (vegetable marrow): 111794979
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Entry
111794979 CDS
T05351
Name
(RefSeq) protein STABILIZED1
KO
K12855
pre-mRNA-processing factor 6
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111794979
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpep03041
]
111794979
Spliceosome [BR:
cpep03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
111794979
Complex C
U5 SnRNP specific factors
111794979
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
TPR_16
TPR_17
TPR_8
TPR_2
ubiquitin
TPR_1
NatA_aux_su
PMC2NT
IgD_del_linker
Motif
Other DBs
NCBI-GeneID:
111794979
NCBI-ProteinID:
XP_023532967
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All DBs
Position
LG05:complement(10289131..10292541)
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AA seq
1023 aa
AA seq
DB search
MVFLSIPNQKTLFLNVNPSSTSILNLKRAIEEVSHIPVSLQRLFLSQSFQVSDLNDSTLL
SHVRVHPNSTITLHVPLYGGMQAPVIPKPRLDFLNSKPPPNYVAGLGRGATGFTTRSDIG
PARAAPDLPDRSATTIGGAAAAPAGRGRGKGGEEEEEDEGEDKGYDENQKFDEFEGNDVG
LFASAEYDEDDKEADAVWEAIDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFADLKR
KLYTLSAQEWESIPEIGDYSLRNKKKRFESFVPVPDTLLEKARQEQEHVTALDPKSRAAG
GTETPWAQTPVTDLTAVGEGRGTVLSLKLDRLSDSVSGLTVVDPKGYLTDLKSMKITSDA
EISDIKKARLLLKSVTQTNPKHPPGWIAAARLEEVAGKIQAARQLIQKGCEECPKNEDVW
LEACRLASPDEAKAVIARGAKSIPNSVKLWLQAAKLEHDNANKSRVLRKGLEHIPDSVRL
WKAVVELANEEDARLLLHRAVECCPLHVELWLALARLETYDRAKKVLNSAREKLPKEPAI
WITAAKLEEANGNTAMVGKIIEKGIRALQRVGVVIDREAWMKEAEAAERAGSVATCQAII
HNTIGVGVEEEDRKRTWVADAEECKKRGSIETARAIYAHALTVFLTKKSIWLKAAQLEKS
HGTRESLDALLRKAVTYRPQAEVLWLMGAKEKWLAGDVPAARSILQEAYAAIPNSEEIWL
AAFKLEFENHEPERARMLLAKARERGGTERVWMKSAIVERELGNAEEESRLLNEGLKRFP
SFFKLWLMLGQLEERLGHLEKAKEAYESGLKHCPSCIPLWLSLAHLEEKMNGLSKARAVL
TMARKKNPQNPELWLAAVRAELRHGNKKESDILMAKALQECQNSGILWAASIEMVPRPQR
KTKSMDALKKCDHDPHVIAAVAKLFWHDRKVDKARTWLNRAVTLAPDIGDFWVLYYKFEL
QHGTDENQKDVLKRCIAAEPKHGEKWQMISKAVENSHQPTEAILKKVVVALGKEEGAAEN
SRN
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atggtgttcctttcgatcccaaatcaaaaaaccctattccttaacgtaaacccttcgtct
acttccattcttaacctgaagcgggcaatcgaggaggtttcccacatacccgtttcgctt
cagcgattgttcttatctcaaagctttcaagtttcagatttgaatgattctacgctgctt
tcccatgttcgagtccatccgaattcaactataacccttcacgttcccttatacggaggt
atgcaagctccggttataccgaaaccaagattggatttcttgaactctaaacctccaccg
aattatgttgctgggttgggacgtggtgcgactggattcacgactaggtctgatattggt
cctgctcgggctgctccggaccttcctgataggtcggcgacgacgattggtggtgctgcc
gctgctccggctggtagagggcgggggaaaggcggggaggaagaggaagaagatgaagga
gaggacaagggatatgatgagaatcagaagtttgatgaatttgaaggtaacgatgtaggg
ttgttcgcatcggctgaatatgatgaggacgataaggaggctgatgcagtgtgggaggca
atcgataagcggatggattcaagaagaaaggatagaagagaggctagattgaaggaggag
atcgagaagtatcgtgcttcgaacccgaaaatcaccgagcagtttgcagacctaaagcgg
aaattgtatactctatcggcccaagagtgggaaagcattccggaaattggggattattca
ttgaggaacaagaagaagagatttgagagctttgtacctgtaccagataccttgcttgag
aaggctaggcaagagcaagaacatgtgacggcgttggatcctaagagcagagctgcaggc
gggacggagacgccttgggcacagaccccagttacggacttgactgccgtcggtgagggt
agaggtacagtgttgtcgttgaaattggataggttatctgattctgtttcaggattgacg
gttgtagacccaaaagggtatctcactgatttgaagagtatgaagataactagtgatgca
gagatatctgatatcaaaaaggcaagattattactcaagagtgttacccaaacaaatcca
aaacatccgcctggttggattgcagctgccaggttagaggaggtggctggaaagattcag
gcggcgaggcaattaattcagaaaggatgtgaagagtgtcccaagaacgaggatgtgtgg
ttggaggcttgtaggctggctagcccagatgaggcgaaggctgtgattgctaggggggca
aagtcaataccaaattcagtgaaattgtggttgcaggctgcaaaactggagcatgataat
gccaataagagtagggttttgaggaaaggtttggaacatattccagattctgttaggttg
tggaaggcagttgtggagctagctaatgaagaggatgccaggcttctgcttcatagggct
gttgagtgttgtcctttgcatgttgaattgtggcttgcattggcgaggctggaaacttat
gatcgtgcgaaaaaggttcttaatagtgcaagggagaagttgcccaaggagccagctata
tggataaccgccgccaaattggaagaagctaatgggaatactgccatggttggaaagatt
atagaaaagggtattcgagctttacagagagtaggcgtggtgattgatagagaggcttgg
atgaaggaggctgaggctgcagaacgtgcagggtcggttgctacctgccaagcaattatc
cataacactataggagttggggttgaggaagaagataggaagaggacctgggtagctgat
gcggaagagtgtaaaaagaggggttcgattgaaacagcaagagcaatttatgcacatgca
cttactgtcttcttgactaaaaagagtatatggcttaaagcagcacagcttgaaaagagc
catggtaccagggagtctcttgatgctttacttcgtaaggctgttacttacaggccacag
gctgaagtgttgtggcttatgggtgccaaagagaagtggcttgctggggatgttcccgct
gctagatccattcttcaagaagcctatgcagccattcccaattctgaggagatttggctt
gcagcattcaagcttgaatttgagaatcatgaacctgagagagctagaatgcttcttgct
aaagctcgggaaagaggaggcacggaacgagtgtggatgaaatctgctattgttgagaga
gaactaggcaacgctgaggaagagagcaggttactgaatgaagggcttaaacgttttcca
tccttctttaaattgtggttaatgcttgggcagttggaggaacgtcttgggcacctggag
aaggccaaggaagcttatgagtctggtttgaagcactgtcctagctgcataccgctttgg
ctttctcttgctcacctggaagagaaaatgaatggattgagcaaggctcgagcagtgttg
accatggccaggaagaagaatcctcaaaaccctgaactttggcttgctgcagtgcgagct
gaattgaggcatggcaataagaaagaatccgatattttgatggccaaggcactgcaagaa
tgtcaaaatagtggcatattgtgggcagcctcaatagagatggtacctcgtccacaacgt
aaaaccaagagcatggatgcacttaaaaaatgcgatcatgatccacatgttattgctgct
gtggccaagttattctggcatgacaggaaggttgacaaagctagaacatggctaaacagg
gcagtaactcttgctcctgatattggtgatttctgggttttgtactacaaattcgaacta
cagcatggtactgatgagaatcagaaggacgtactgaagagatgtattgctgcagaaccc
aaacatggtgagaaatggcaaatgatttcaaaggccgtggagaactcccatcagccaact
gaggcaatcttgaaaaaagtagtagttgccctaggtaaggaagagggcgctgctgaaaat
agcagaaattag
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