Cucurbita pepo subsp. pepo (vegetable marrow): 111795054
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Entry
111795054 CDS
T05351
Name
(RefSeq) probable NOT transcription complex subunit VIP2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111795054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111795054
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111795054
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111795054
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
111795054
NCBI-ProteinID:
XP_023533054
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Position
LG05:5855756..5859577
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AA seq
402 aa
AA seq
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MGLDSLQYVYSHHYSTNPIMDSLVRSSVETAFGLEESVQKHCCISXLSPIVQQNQEFSIQ
SEDFPALSRFKGGNVDYGMDIHQKDQHENSVPIMQSQQFSIGRSAGFNLGSTYSHRPQQQ
QQHSPAVSNSTVSFPPANNQDLLHLHGSDIFPSSHAASYHQQSSGPPGIGLRPLSSPNSV
SGMGYDQLIQQYQQHHSQPQFRLQHMSGVSQSFRDQGMKSMQAAQSSPDPFGLLGLLSVI
RLSDPDLASLALGIDLTTLGLNLNSADNLHKTFGSPWSDEPAKGDPDFNVPQCYLIKPPP
SLHQGYFSKFTLETLFYIFFSMPKDEAQLYAANELYNRGWFYHKEHRFWFIRVSNMEPLV
KTSSYERGSYLCFDPHTFETVRKDNFVLHYEMVEKRPALPQH
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgggtttggattcacttcaatatgtatattctcaccactactccacaaatcccattatg
gattctttagtccgaagtagtgttgaaactgcttttgggctagaagaatcagtgcagaaa
cactgctgcatttcttnccttagtcctattgttcaacaaaaccaagagtttagcattcag
agtgaagactttccagcattatctagatttaaaggtggcaatgttgattatggcatggac
attcatcagaaagatcaacatgaaaattctgtgcctatcatgcagtctcagcagttctct
attgggagatctgctggatttaacctagggagcacatactcacatcgaccccagcagcaa
cagcaacattctcctgcagtcagcaacagcacggtgtcctttccgcctgctaataatcag
gatctcctccatttacatggatcagatatatttccatcttcacatgctgcatcctatcac
cagcagtctagtgggcctcctggtattggtttaagacctctgagctctcctaactcagtg
tctggaatgggttatgaccaacttattcagcaatatcagcagcatcacagtcaaccgcag
ttccggttgcaacatatgtctggtgttagccaatcatttagagatcaagggatgaagtct
atgcaggcagctcaatcttctcctgacccattcggtttacttggtttgttaagtgtaata
aggttgagtgatcctgatcttgcatcccttgcgctcgggattgatttgaccacgttagga
ttaaatttgaattcagcagataaccttcacaagacttttggttccccgtggtctgatgag
cctgctaagggtgatccagatttcaatgtacctcagtgttatcttattaaaccaccacct
tctctgcatcaaggatacttctcaaaattcactttggaaacgctgttttatatatttttc
agcatgcccaaagatgaagctcagttgtatgctgcaaatgaactttataatagaggctgg
ttttatcacaaagaacatcgattctggttcattcgggtctctaatatggaaccgcttgtg
aaaactagctcgtacgagagaggatcttatctctgttttgaccctcacacatttgaaact
gtccgcaaggataattttgtgcttcactacgagatggtggaaaagagaccagctctaccg
caacattag
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