Cucurbita pepo subsp. pepo (vegetable marrow): 111795368
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Entry
111795368 CDS
T05351
Name
(RefSeq) serine/arginine-rich splicing factor SR34A-like isoform X1
KO
K12890
serine/arginine-rich splicing factor 1
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111795368
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpep03041
]
111795368
Spliceosome [BR:
cpep03041
]
Common components
Common spliceosomal components
SR proteins
111795368
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
RRM_3
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
111795368
NCBI-ProteinID:
XP_023533513
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Position
LG05:complement(3498080..3502921)
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AA seq
275 aa
AA seq
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MSSRFSRTIYVGNLPSDIRENEIEDLFYKFLWQYGRILDIELKIPPRPPCYCFVEFENVR
DAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGGGGGGRFGVSKRS
EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLD
DTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSARRNRSKSAEQSV
SRSVSRSRSLSPVKSSRRRSKSRSGSPREAREGSG
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtcgtttttcccgcacgatatatgttggaaacttgccctcggacataagagag
aatgaaattgaagatttgttctacaagttcctttggcagtatggtcgaattttggatatt
gaattgaagattccgccgcgccctccatgttattgttttgtggagtttgagaatgttagg
gatgcagaagatgcaattcgaggtcgtgatggatataattttgatggttgccgcctaagg
gttgaacttgcacatggtggtagaggcccttcatcaagtgatcatcgtagcaattatggt
ggcagtggtggtggtggtggtggtggtggtggaggacgttttggtgtttcaaaacgatca
gaatatcgagttattgtacggggactcccatcttctgcttcttggcaggatttgaaggat
catatgcgcaaggctggtgatgtgtgttttgctgaagtttcccatgacagcgaagggaca
tttgggactgttgattatacaaactatgacgacatgaagtatgctattcgaaaacttgac
gatacagaattcaaaaatccttgggcaagagcatacattcgggtgaaaaagtacgaaggc
agtcccactaggggtcggagcagaaacagaagcagaagccgtagtaggagccggagccgg
agccgaagccgaagccgaagtgcgaggcgaaataggagcaaatcagccgaacaatctgtt
tctagatcagtttcaagatcaagatctctatcccctgttaaatcttcaagacgacgttca
aaatcaagatctggatcaccacgtgaggcacgagaaggtagcggatga
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