Cucurbita pepo subsp. pepo (vegetable marrow): 111795978
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Entry
111795978 CDS
T05351
Name
(RefSeq) ruBisCO large subunit-binding protein subunit alpha
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111795978
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111795978
03110 Chaperones and folding catalysts [BR:
cpep03110
]
111795978
03029 Mitochondrial biogenesis [BR:
cpep03029
]
111795978
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cpep04147
]
111795978
Enzymes [BR:
cpep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
111795978
Messenger RNA biogenesis [BR:
cpep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
111795978
Chaperones and folding catalysts [BR:
cpep03110
]
Heat shock proteins
HSP60 / Chaperonin
111795978
Mitochondrial biogenesis [BR:
cpep03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
111795978
Exosome [BR:
cpep04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
111795978
Exosomal proteins of other body fluids (saliva and urine)
111795978
Exosomal proteins of breast cancer cells
111795978
Exosomal proteins of colorectal cancer cells
111795978
Exosomal proteins of bladder cancer cells
111795978
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
DUF1192
Motif
Other DBs
NCBI-GeneID:
111795978
NCBI-ProteinID:
XP_023534412
LinkDB
All DBs
Position
LG05:complement(4995071..4998601)
Genome browser
AA seq
583 aa
AA seq
DB search
MASANAISSASILCSSQKSLRKVNQPQSNRVNYRQAGSRFVVRATAKDIAFDQSSRTALQ
SGIDKLANAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREVA
SKTNDSAGDGTTTASVLAREIIKLGLLNVTSGANPVSLKRGIDKTVQGLIEELEKKARAI
EGRDDIKAVASISAGNDELIGSMIADAIEKVGPDGVLSIESSSSFETTVEVEEGMAIDRG
YISPQFVTNPEKLIAEFENARVLITDQKISAIKDIIPILEKTTQLRAPLLIIAEDITGEA
LATLVVNKLRGILNVAAIKAPGFGERRKAMLQDIAILTGAEFQASDLGLLVENTTIEQLG
LARKVTISKDTTTIIADAASKDELQARIAQLKKELAETDSVYDTEKLAERIAKLSGGVAV
IKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSTLVPAIKDKLEDAEE
KLGADIIQKALVAPASLIAQNAGVEGEVVVEKIKSSEWEIGYNAMTDKYENLVEAGVIDP
AKVTRCALQNAASVAGMVLTTQAIVVEKPKPKAPIAAPQGLTV
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctgcgaatgcaatttcttccgcatccattctttgttcttcccagaagagcttg
aggaaggtgaatcaaccgcagagtaacagggtgaattacagacaagcgggtagcagattt
gttgtgagagctactgcaaaggatatagcgttcgaccagagttctaggactgcacttcag
tctgggattgataagcttgccaatgcagtcggtctgactcttggacccagggggaggaat
gttgtgctggatgagttcggcagtcccaaagtagtaaatgatggtgtgactattgctcgt
gcaattgagttgcctgatcccatggagaatgctggtgcagctctaattagggaggtcgca
agtaaaactaatgactctgctggtgatgggacaacgactgcctcagtcctggcgagggag
attatcaaactaggccttctgaatgttacttccggagcaaatccagtatcactgaagaga
ggaattgacaagacagtgcaaggattgattgaagagcttgagaagaaggctagggctatt
gaaggcagagatgatatcaaagccgttgcctctatctctgctggaaatgacgagctgata
gggtccatgatcgctgatgccattgaaaaagtggggcccgatggtgtcttgtccattgag
tcatcatcttcctttgagaccactgtggaagttgaagaagggatggcgattgatagaggc
tacatttctcctcagtttgtcacaaaccctgagaagttaattgctgaatttgagaatgca
cgagtgttaattacagatcagaaaatttctgcaataaaggatataatccctatattggag
aaaaccacgcaattgagagctcctttgctcattattgcagaggatattactggtgaagct
ttggctacacttgttgtgaacaagttgcggggtattctaaatgttgctgccattaaagct
ccaggatttggggaaaggagaaaggctatgctccaagacattgccattttgacaggtgct
gaatttcaagccagtgatcttggattgcttgtagaaaatactacaattgaacagcttggt
ttggcccgaaaagtgaccatctcgaaggacactaccaccatcattgctgatgctgcttca
aaagatgagctacaagcaaggattgcacagctaaagaaggaattggctgagacggattct
gtttatgacactgagaaactggctgaaagaattgccaaattatctggtggtgttgccgtc
attaaggttggagctgcgacagagactgaacttgaggaccggaagctccgtattgaggat
gcaaagaatgcaacttttgctgccatagaggaagggattgtacctggtggtggtactgca
ctggttcatctctctactcttgtccctgcaatcaaggacaagcttgaagatgcggaagag
aagctaggtgctgatattatccaaaaggcgctggtagcaccggcatccttaattgcccaa
aacgctggagttgaaggggaagtagtggtggagaagatcaagtcgagtgaatgggaaatt
gggtataacgcaatgacagacaagtacgagaatctggtagaggccggtgtgattgaccca
gccaaggtgacaagatgtgcattgcagaatgcggcttcagttgctggcatggtcctaacc
acacaggccattgtagttgaaaagcccaagcccaaggcacccatcgctgcaccacaaggc
cttaccgtttaa
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