Cucurbita pepo subsp. pepo (vegetable marrow): 111796028
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Entry
111796028 CDS
T05351
Name
(RefSeq) exosome complex component RRP41-like isoform X1
KO
K12587
exosome complex component MTR3
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111796028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111796028
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
111796028
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
111796028
NCBI-ProteinID:
XP_023534484
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Position
LG05:5018628..5021483
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AA seq
259 aa
AA seq
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MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAYAVFRTGAVNAAS
GSAYAEFGNTKVIVSVFGPRESKKAMMYSDIDRLNCSVSYSTFSTPVRGQGSENKEFSSM
LHKALEGAIILEMFPKTTVDVFALVLESGGIDLPVVISCASLALADAGIMLYDLVASVSV
SCFGKNLLIDPMLEEENYEDGSLMITCMPSRCELTQLTITGEWSTAKINEGMQLCVDALC
KLVKIMRSCLKESATISEE
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaaagcgacacctgctacgactacgtattctccgtctcctactacccacaaa
accaggccacccatcttcagaagcgacgacgtcgattgggttcgcccagatggccgaggc
ttccaccagtgccgtcctgcttatgcagttttcaggactggtgctgtaaatgctgcttca
ggttcagcttatgcagagtttggtaataccaaggtcattgtttctgtttttggccctaga
gaaagtaagaaagcaatgatgtacagtgatattgaccggctgaattgtagtgtcagttat
tcaacattttcgactccagttcggggacagggatcagaaaacaaggagttctcttcgatg
ctacataaagctttggaaggggcaataatactggagatgttccccaagacaactgttgat
gtatttgccttggtgttggaatctggaggcattgaccttcctgttgtaatatcatgtgct
agtcttgctcttgctgatgcagggattatgctttatgatcttgttgcctcagtttctgtg
agctgctttgggaagaatcttcttattgatcctatgttggaggaggaaaactacgaagat
ggaagtttgatgataacttgtatgccatctcgttgcgaactcactcagctcactatcaca
ggcgagtggtcaactgctaaaattaatgagggtatgcaactttgcgttgatgcgttatgt
aagcttgtgaagatcatgcggtcatgtttgaaggaatctgccaccatttcagaggaataa
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