Cucurbita pepo subsp. pepo (vegetable marrow): 111796877
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Entry
111796877 CDS
T05351
Name
(RefSeq) symplekin-like isoform X1
KO
K06100
symplekin
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111796877
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpep03021
]
111796877
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111796877
Transcription machinery [BR:
cpep03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111796877
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
111796877
U7-dependent histone pre-mRNA processing factors
111796877
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Adaptin_N
Motif
Other DBs
NCBI-GeneID:
111796877
NCBI-ProteinID:
XP_023535440
LinkDB
All DBs
Position
LG06
Genome browser
AA seq
1310 aa
AA seq
DB search
MAGVFRERALSLLAAANNHGDLTVKISSLKQVKDIILAIEPSFAAELYSYLVELQSSPES
LLRKLLIEVIEDIGLRAMEHSPLLMSVLLASLKDEDSIVAGQSITSGQKLFCGALREMTL
QLHRRGKVERWLEELWMRILKFKDEVLAIAIEPGSVGKRLLALKFLETYVLLFTSDTNDP
QKAISEGNGDVFNISWLAGGFPILDPVVLASEANRMLGILLNLLQTSSVAGTYTVTIVSS
LAAIARKRPVHYGIILSALLEFVPSFEMVKGRHAASIQYSIRSALLGFLRCLHPAFVELG
FQSRDRLLKALRAMNAGDAADQVIRQVDKMVKAADRASRDALLGKDDQSSNQHNASVDLT
RKRPRLLDDEELPNGHEVSKQVRLGPDFHPISTVRKDGTRQSAISNGTSHDVPTLDVEST
PAEQMIAMIGALLAEGERGAESLEILISNIHPDLLSDIVITNMKNLPKAPPPTTRHGDLP
VTHQVSSHGQVLAPSAPLSSVQTSVSTAQAPFSLATSAGSTYAESAVNSLPVDSKRDPRR
DPRRLDPRRGGVSSASSVEEAISNTSDVDGSISLGKSALVPVSTTIENSSVFSISKTKVE
EKIIETPFPIGTDQPTPKSKSPDRAEKVDSILEIDAPLDPFSTAVGKADDDLVAVNLVDD
SATKRDDTSSSIEYNPYSPSVTNAAASEDTCEELPQLPPYVDLTPEQQISVRNLAAEKIF
DSCKNLNGADCHQKCSAIIARMVAQVDADDDIVRMLEKQVASDYQQQKGHELALHVLYHL
HSLNILDSVESSSFVVYEKFLLVVAKSLLDAFPASDKSFSRLLGEVPVFPDSTLELLHNL
CYCDITDNQGKDSPDIERVTQGLGTVWNLIVKRPHSRQACLDIALKCAMHSEVKVRATAI
RLVANKLYRLSYISDRIEQHATNMFLSAVDGVDQTDVKPLPCGSIEQSTGGEGESQETSI
CGSQVSDPGTSEDNSTRSSQPTVHASSTLSLSEAERHISLLFALCVKKPCLLQTVFDAYG
RAPKAAKEQAVHEHIPNLITALGSSNAELLRIISDPPPGSEHLLAMVLQVLTQETTPSSD
LIATVKHLYETKLKDVTILIPMLPSLSKNEVLPVFPRLVDLPLEKFQRALAHILQGSAHT
RPALTPVEVLIAIHNIIPEKDGLALKKITDACSACFEQRTVFTQQVLAKALSQMVEQTPL
PLLFMRTVIQAIDAFPTLVDFFMEILSKLVNRQVWRMPKLWFGFLKCAFETQPHSFRVLL
QLPPPQLENALNKYVNLKGPLAAYASQPSTKSTLSRPTLVLLGLENDRRL
NT seq
3933 nt
NT seq
+upstream
nt +downstream
nt
atggcaggagtttttagagaaagagcactgtctctcctcgccgccgctaacaaccacggc
gatttaacggtgaagatttcatctttgaagcaggtgaaggatatcatactagccatcgag
ccatctttcgcagcagagctctactcctacttggtcgagcttcagtcttcccccgagagc
ttactacgtaaattgttaattgaggtgattgaagacattggattgagagccatggaacat
tctcctctgttaatgtcagttttattggcatctttaaaggatgaagactctattgtagca
ggacaatcaattactagtgggcaaaaattattttgtggtgctttaagagagatgacattg
cagttgcatcgacggggtaaagttgagagatggcttgaagaactgtggatgaggatactg
aagtttaaagatgaggttttggcaattgccatagagcctggttctgtcgggaagaggttg
ctggctttgaaatttttggaaacatatgttctactttttacatccgatacaaatgatcca
caaaaagctatctcagaaggaaatggggatgtttttaacatttcatggcttgctggtggg
tttccgatattggatccagttgtgctagcgtcggaagctaataggatgcttggtattctg
ttgaatttgttgcagaccagttctgttgctggtacatacacagtaacaattgtcagtagt
ttagcagctatagcaaggaaaagaccagttcattatggtatcattctatcggcactgttg
gaatttgttccaagttttgagatggtaaaagggcgtcatgctgccagtatccagtattct
ataagatctgcacttttgggattcctaaggtgtctgcatccagcgtttgtagagcttggt
tttcagtcaagagacaggttgctaaaggctttaagagctatgaatgctggagatgctgca
gatcaggtaatcaggcaagtggacaaaatggtgaaggctgcagatcgagcttcacgtgat
gctttgctgggcaaggatgaccaatcatcaaatcagcataatgcatcagtggatcttaca
agaaaaagacctaggcttctggacgatgaagaacttcccaatggccatgaggtttccaag
caagttcgcttaggtccagattttcacccaatttccacagtgcgaaaagatggtactcga
cagagtgccatctctaatgggacatcccatgatgttcctacattagatgttgaatcgact
cctgcagagcagatgattgcaatgattggtgccttactagctgaaggggagcgaggtgca
gaatcacttgaaattctgatttcaaatattcatcccgacttgctgtctgatattgtcata
actaacatgaagaacttgcccaaagccccccctccaaccactaggcatggggacttacct
gtaactcatcaagtaagtagtcacggacaagttctggcaccatcagctccattgagttct
gtgcaaacttcagtttctactgcacaagctcctttttctttggccacctccgctggttca
acttatgctgagtctgctgtcaatagtctccctgttgactctaaacgcgatccaagaagg
gatccccgccgccttgatcctcgccgtggaggagtatcttctgcttctagtgtggaagag
gcaatttcaaatacatctgatgttgatggttccatatctttgggaaaatctgctttggtt
cctgtttctacgacaatcgagaattcttcggtattttctatatctaaaacaaaagttgaa
gaaaaaatcattgaaactccattcccgattggaacagatcaaccaacccccaaatcaaaa
tctcctgatagagctgagaaagttgactctatattagagattgatgcccctctggatccc
ttttctactgctgttggaaaagctgatgatgatttagttgcagttaatttggtcgatgac
tcggcaacaaagagggatgatacatcgtcttctatagaatacaatccgtattctccatca
gttacgaatgcagctgcatctgaagatacctgtgaggaattgcctcagcttcctccatac
gttgacttgactccagaacagcaaataagtgtaagaaatttggcagctgaaaagatattt
gattcgtgcaagaatttaaatggggcagactgccatcagaaatgctcggcaataattgct
cgaatggttgctcaggttgatgctgatgatgatattgttcgaatgttggaaaaacaagtc
gctagtgattaccaacagcaaaaggggcatgagcttgctttacatgtcttatatcacctg
cattcactcaatattctggattcagtggaaagttcttcttttgttgtgtacgagaagttt
cttctagttgtggctaaatcgctgctagatgcttttccagcttcagacaaatcttttagc
agacttcttggtgaagttccagtttttccggactctacgttggaactattacataacctt
tgctattgtgatataactgacaaccaggggaaggacagtcccgatattgaacgtgtcacg
caaggtcttggcactgtttggaatttgattgtgaaacgtccacatagtcggcaagcttgc
ttagatattgctcttaagtgtgcaatgcattcagaagttaaggttcgagcaacagctatt
agactggtggcgaacaaactctatcggttaagttacatttcagataggattgagcaacat
gcaacaaacatgttcctgtctgcagtagacggcgtagatcagacagatgtaaagccttta
ccatgtggatcgatcgagcaaagcactggaggagagggtgagagtcaggaaacatccatt
tgtggttctcaagtttcagatcctggaacctcagaagacaattcgacgaggagttcacaa
cctacagtacatgccagttcaaccttgtcactttcagaagctgaaagacatatttctctt
ctttttgccctatgcgttaagaaaccttgtctgcttcaaactgtatttgatgcttatgga
cgggctcctaaagcagcgaaagagcaggccgttcatgaacatatccctaatcttattacg
gccctaggctcatctaatgctgaattgcttagaataatatcagatccacccccaggaagt
gaacatcttttagcaatggttctacaggtactaactcaagagacaacgccttcttcggat
ctgatcgcaaccgttaaacatttatatgaaactaaactgaaggacgtgactattcttatt
ccaatgttgccctcactttccaaaaatgaggttttacctgtttttcctcggctggttgat
cttccattggagaagtttcagagagcgttggctcacatattacagggttcagcacataca
cgtccagctttaacgcctgttgaagtattgatcgccatccacaacataattcctgaaaaa
gatggccttgcgttaaagaagataacggatgcttgttcagcttgttttgagcaacgtaca
gtgttcactcagcaggttttagcaaaagccttgagccagatggttgaacaaacgccactc
cctcttctcttcatgagaactgtgattcaagcaattgatgcttttcctactctggttgat
tttttcatggagatactttccaaacttgtaaacagacaggtttggaggatgccaaaattg
tggtttggtttcttgaaatgtgcatttgaaacacaacctcattcgtttcgagtactactg
cagttaccaccgccacagctcgaaaatgctttgaacaaatatgtcaaccttaaaggtcct
cttgctgcttatgccagccagcccagcacaaaatctactctctctagaccgacactcgta
cttctgggtctcgaaaacgacaggcgtttgtag
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