Cucurbita pepo subsp. pepo (vegetable marrow): 111797024
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Entry
111797024 CDS
T05351
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111797024
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111797024
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
111797024
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D2
GTP_EFTU_D3
MMR_HSR1
Zn_ribbon_RanBP
GTP_EFTU_D4
Vps36-NZF-N
zf-Sec23_Sec24
Motif
Other DBs
NCBI-GeneID:
111797024
NCBI-ProteinID:
XP_023535641
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Position
LG06:2185724..2192253
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AA seq
788 aa
AA seq
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MPRKVSYGLDFDEDYDEYDDYDYYDNDFDVEEKEKTPEAKEGTKGHKLWRCPICTYDNED
SFTACDICGVLRIPLVNDRNNRDDGTDLFHAVENNCKDSGVSKMAKSLFASSPNQIPKRE
VKFQEQNDKFLEEREDNILKIGNIRGHLHEVHNASSTYSHVRTNIVPFKFDIPSPDDVVS
KGLRSSKVDLKAVSHNDFNSSILSSDVTKKCENNEVLASKGAHSSSAVLPTGKLGSVGNT
QLSTKSSDNWGTTIGKITVVTEEHNTSISVTKNSRSRDNRSSSTSTSKSAGKFDSMDESS
NPSVEREKPQGLAGSLNNMVLNVKSAYANYISGLGKTSNVPYKVDKWMLPDKAVDTLTQL
NLAIVGHVDSGKSTLSGRLLHLLGRVTQKEMHKYEKEAKSLGKGSFAYAWALDESAEERE
RGITMTVGVAYFDSKRYHVVVLDSPGHKDFVPNMISGATQADAAVLVIDASVGAFEAGMD
SSKGQTREHVQLIRSFGVDQIIVAVNKMDVVEYSKDRYDFIKLQLGTFFRSCGFKDSSLT
WIPLSAMANQNLVNAPSDAQLLSWYRGPNLLEAIDSLQPPARDFSKPLLMPICDVVRSLS
LGQVSAIGKLEAGALKSGSKVLIMPSGDKGTVRTLECNSQACKIARAGDNVTVSLQGVDA
SSVMAGGVLCHPDFPVAIAKHLELKILTLELATPILIGSPLEVHIQHVKEAARVARIVSL
LDSKTGKVTKKAPRVLSAKQSAVIEVILQSPVCVEAFSTSRALGRVFLRAMGRTIAVGIV
TQLIGDPE
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgtaaggtgagctacgggttggatttcgatgaagattacgacgagtacgacgat
tatgattattacgacaatgacttcgacgtagaagaaaaagagaagacacctgaggctaag
gaaggaacaaaggggcacaagctttggcgatgcccgatctgcacttacgacaatgaagac
agttttactgcttgtgatatatgtggagttctgcgcatccctttggtcaacgacagaaat
aatcgcgatgatggaacagatctctttcatgcagttgagaacaattgcaaagactctgga
gtatccaaaatggccaagtctctctttgcatcgtcaccaaatcagatacccaaaagggaa
gtaaaatttcaagagcagaacgataaatttttggaggagagagaagataacatcctcaag
attgggaatatccggggccatttgcatgaagtccataatgcttctagtacctatagtcat
gtccgtactaatatagtccctttcaagtttgatattccatccccagatgatgtggtttct
aagggattgcgttcctccaaagttgatttaaaagcagtcagccacaacgacttcaactct
tcaatattatcttcagacgtcactaagaagtgtgaaaataatgaagtattggcttcaaaa
ggtgcacatagctcgtctgctgtattgccgacgggcaaattaggaagtgtaggaaataca
cagttgagtaccaaaagttcagacaactggggcacaacaattggaaaaattacagtggtc
actgaagagcacaatacgtcaattagtgtaacgaaaaattcacgatcacgtgataacagg
tcatcaagcacttccacatcaaaatcagcaggcaaatttgacagcatggatgagagcagt
aacccttctgtggagcgggaaaagccccaaggtcttgccggtagtttgaacaacatggtt
ctaaatgtcaaatctgcctatgcaaattatattagtgggctaggaaaaacatcaaatgtg
ccttacaaggttgataaatggatgctacctgataaagctgtagatactttgactcagctg
aatcttgctatagttggtcatgttgattctggaaaatctactctctcaggaagacttctg
cacttattgggacgtgtaacccagaaagaaatgcacaaatatgaaaaagaagcaaagtcc
ttgggcaagggttccttcgcttatgcctgggcactggacgagagtgcagaagaaagagag
agaggaataactatgactgtcggtgtcgcttattttgactctaaaagatatcatgtagtt
gtactcgattccccaggccataaagattttgttccaaacatgatatctggggcaacacaa
gctgatgccgcagttcttgttatagatgcatctgttggtgcatttgaagccggtatggac
agctcgaaggggcaaacaagagaacatgtgcagttaatcaggagctttggcgtagatcag
ataattgttgccgttaacaaaatggatgtggtggagtattccaaagatcgctacgacttc
attaaactgcaacttggaaccttttttcgttcttgtggttttaaggattcatcgttgact
tggattccattgagtgccatggcaaatcagaatctggtgaatgccccttctgatgctcaa
ttgttgtcctggtatcgtggacctaatctattggaggcaatcgattcccttcaaccaccc
gctagagatttctctaagccgctgcttatgccgatatgtgatgtagttagatcgctttca
ctaggacaagtgtctgccattggcaagctggaagctggagctctcaagtctggatctaag
gttctaatcatgccatctggagataaaggcaccgtgcgcactttagaatgcaattctcag
gcttgcaaaattgcaagagcgggagacaatgtgactgttagtctacaaggagttgatgca
agtagcgtgatggctgggggtgtcctatgtcatcctgattttcctgttgctattgcaaaa
catttggaattgaagattctaaccttggaacttgcaactccaatattaataggatctccg
ttggaagttcatatacaacatgtgaaggaggctgctagagttgcaaggatagtgtcgttg
cttgattcaaagacgggaaaggtcacgaagaaggcaccgcgtgttctaagtgctaaacag
agtgcagtgattgaggttattttacaaagcccagtttgtgtcgaagcattctcaactagt
cgagctctcgggcgggtatttctgagggcaatgggcagaaccatagccgtcggcattgtg
acccaactaattggagaccctgaatga
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