Cucurbita pepo subsp. pepo (vegetable marrow): 111797056
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Entry
111797056 CDS
T05351
Name
(RefSeq) CCR4-NOT transcription complex subunit 9-like
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111797056
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111797056
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111797056
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Rcd1
DUF2249
Motif
Other DBs
NCBI-GeneID:
111797056
NCBI-ProteinID:
XP_023535704
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Position
LG06:4941934..4948891
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AA seq
319 aa
AA seq
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MSNLPQSHSMNAAFGGPGIGSSIPSASGAAPNKERKMASSEQLVLDLSNPELRENALLEL
SKKRELFQDLAPLLWNSFGTIAALLQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVAS
HPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTE
IIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAE
QPSSRLLKHIIRCYLRLSDNPKACDALRSCLPDMLRDSTFNGCLRDDPTTRRWLQQLLIS
VGMSRVPTLQAGAGFDHMM
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatcttccccaatcgcactccatgaatgctgcgtttggaggtcctggtatcggt
tcgtcgatccccagtgcctccggagctgcaccgaacaaggagcgaaaaatggcttcttcg
gagcaactagtgctcgacctcagcaacccggagctccgggagaacgctctccttgaactg
tcgaagaagagggaactgtttcaagatttggctccactgttatggaactcctttggaacc
attgctgccttgttgcaagaaattgtatcaatatatcctgttctgtctccccctaatctg
accccggcgcagtcgaatagagtttgcaatgctcttgctcttcttcagtgtgtagcttca
cacccagatacaaggatgttgtttctcaacgcgcacataccgttgtatttgtatcctttc
ctcaacacgactagcaagtcgaggccttttgagtacttgcgccttactagcttgggtgtc
atcggtgcattggtgaaggtagatgatacagaagtaataagttttctgctgtcaactgaa
ataattcctctatgcctgcgtacaatggaaatgggaagcgagttgtcaaaaacagttgca
acatttatcgtgcagaaaattttactggatgatgtcgggttggattatatttgtactaca
gctgaaagatttttcgctgttggtcgagttctggggaatatggttgcagctcttgctgag
caaccttcatctcgtctcttgaagcacataattcgatgttatcttcgattgtccgataac
ccgaaagcttgcgacgccttaaggagctgtcttccagacatgctgagagattctactttc
aatggctgtcttcgggatgatccgaccactaggcggtggctgcaacagttgcttatcagt
gtaggaatgagtagggttcctacacttcaggcaggggctggatttgatcacatgatgtga
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