Cucurbita pepo subsp. pepo (vegetable marrow): 111797112
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Entry
111797112 CDS
T05351
Name
(RefSeq) probable pectate lyase 18
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep00040
Pentose and glucuronate interconversions
cpep01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
111797112
Enzymes [BR:
cpep01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
111797112
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
111797112
NCBI-ProteinID:
XP_023535784
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Position
LG01:complement(7516857..7520017)
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AA seq
543 aa
AA seq
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MFLFLFQKPDLFRTQCLFLRLIPQNSPARNILKFLVLPSRMFLVLTILLLWMSGSSAASF
NLTLPHQHPDPDSVADELQRTVNASVWRRQMLSESKDQTSSCLTGNPIDDCWRCDPNWAA
NRQRLADCGIGFGRDAMGGKGGKIYIVTDSSDSDPTNPTPGTLRHAVIQFEPLWIIFSAD
MNIKLKYELIINNFKTIDGRGANVHITGGGCITIHSVSNIIIHNIHVHHCKPSGNANIRS
TPSHVGHWGLSDGDGISIFDSRKIWIDHCSLSYCKDGLIDATMGSTGITISNSYFSHHDK
VMLLGHDDKYTQDSGMQVTIAFNHFGEALSQRMPRCRYGYIHVVNNDFTAWEMYAIGGSA
RPTINSQGNRYTAPVDPNAKEVTKRLDTAETEWAAWNWRSEGDILVNGAFFVPSGAGLST
QYGKASSVEPKSVALINQLTMNAGVFGAPRYNVGQGIVYQGFNGSNGGDDNSDGDDDGGY
GGNTTINNNPIYGNGGGSNDGYHGMIFKGDGYRSSSLSSSSNLCIQIIIILYIVKNYSSL
STL
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgtttttattcctgtttcagaaaccagatttgtttcgaacacagtgtctttttcttcga
ttaataccgcagaacagcccggccagaaacatcctcaaattcctcgttctaccttcgagg
atgtttcttgttcttaccattctcttgttatggatgtctggttcttctgctgcttctttc
aatcttacattaccccatcagcatcctgaccctgactctgttgctgatgaacttcaaagg
acagtcaatgcatctgtatggagaagacaaatgctgtccgaatcgaaggatcaaacttcc
tcttgcctcaccggaaaccccatcgacgattgctggcggtgcgacccgaattgggcggcg
aaccggcagcgactagctgactgtggtatcgggttcggccgcgacgccatgggtggcaaa
ggcggcaaaatctacatcgttaccgactcgtcggattcggatccgacgaaccccactccg
ggaactctccgccacgctgtgatccaattcgaacccctgtggataatcttctccgccgac
atgaacatcaagctcaaatacgaacttatcatcaacaacttcaaaaccatcgacggccgt
ggcgccaacgtccacatcaccggcggcggatgcatcaccatccattccgtgtccaatatc
atcatccacaacatccacgtgcaccactgcaaaccctccggcaatgccaacataaggtcg
accccgagccatgtggggcattgggggctatcggacggagatgggatatcgatatttgac
tcgaggaagatttggatcgaccattgctcgctttcatactgcaaagatgggctgatagat
gcaacaatgggatcgacggggataacaatatcaaacagctacttctcgcaccatgacaag
gtgatgctgttggggcacgacgacaagtacacgcaggactcagggatgcaagtcaccatt
gcgttcaaccacttcggcgaggcgctgagccaacgcatgccgcgttgtaggtatggctac
attcatgtcgtcaacaatgatttcaccgcttgggaaatgtatgccattggcggcagtgcc
cgcccaaccattaacagtcagggcaaccgttacaccgcgccggtggaccctaatgccaaa
gaggtgacgaaacgtttagacacggcggagacggagtgggcggcgtggaattggcggtcg
gagggtgatattttggtgaacggcgcgttttttgtgccgtctggtgccggacttagcacc
cagtacggtaaggcctccagcgtcgagcctaagtcggtggctctcatcaatcagctcact
atgaacgccggcgttttcggcgcccccaggtacaatgtaggtcaaggaattgtatatcaa
gggttcaacggtagcaacggtggcgatgacaatagcgatggcgatgatgatggcggatat
ggtggtaacactaccataaataacaatccaatttatgggaatggcggtggtagcaatgat
ggctaccacggaatgatatttaaaggtgacggatatagatcatcatcactatcgtcgtcg
tcaaacttatgtatccaaattataataattttgtatatagtaaaaaattatagcagtcta
tcgacattatag
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