Cucurbita pepo subsp. pepo (vegetable marrow): 111797219
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Entry
111797219 CDS
T05351
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
111797219
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpep03021
]
111797219
03036 Chromosome and associated proteins [BR:
cpep03036
]
111797219
Transcription machinery [BR:
cpep03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
111797219
Coactivators
SAGA/TFTC/STAGA complex
111797219
Chromosome and associated proteins [BR:
cpep03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
111797219
STAGA complex
111797219
TFTC complex
111797219
SAGA complex
111797219
SLIK complex
111797219
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_EML
ANAPC4_WD40
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
LisH
PALB2_WD40
WD40_like
KNTC1_N
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
111797219
NCBI-ProteinID:
XP_023535938
LinkDB
All DBs
Position
LG06:1649161..1657284
Genome browser
AA seq
674 aa
AA seq
DB search
MDEEQIANFVSAYLKKKGFKETEQAFQDELRHNKTNSSSSASSIDLDFAKRLLSFSEVEN
IPARYLEGYSKLRSWAYNSLDLYKHELLRVLYPVFIHCFMDLVAKGHIQEARTFFNRFRE
DHEMLHLRDLQKLEGVLSPSHLEEMEFAHSLRQSKVNIKICQYSYEMLLQYLHKTQTTVI
LGIINERINFQVFPGQPSSISDDAELVTLSGSTQETANQINKKEVQWGLLEDSLEERLEK
AAGLLSDSEKAEVETKDGDVDENKKRTTEGGKQGASIKKVKKDKTAGAPGKTLRAEANSA
SMAPRVKPELALPIITTEVEQSILEDLRNRVQLSSVALPSVSFYTFINTHNGLNCSSISH
DGALVAGGFSDSSLKVWDMAKLGQQAGNTVLQDENDMSTSDPVTGHTSGKRSYTLFQGHS
GPVHSATFSPIGDFVLSSSADTTIRLWSTKLNASLVCYKGHNYPVWDVQFSPVGHYFASC
SHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVR
IFIGHRSMILSLAMSPDGRFMASGDEDGTIMMWDLSTGRCVTPLIGHTSCVWSLAFSCEG
SLLASGSADCTVKLWDVTSSTKPPRTDENKSGTANRLRSLKTLPTKSTPVYSLRFSRRNL
LFAAGALSKSASTA
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagaacagatagcgaattttgtgtcagcgtacttgaagaagaagggtttcaaa
gaaacggaacaagcttttcaggatgagctacgccataacaagactaattcatcctcttca
gcctcttccattgacctcgacttcgctaagcgcttgctctccttctccgaagtagagaat
attccagccagataccttgaaggatatagcaagcttaggtcctgggcttacaactcgcta
gatttgtacaagcatgagttgcttcgtgtgctatatcctgtgtttatccattgtttcatg
gatcttgtggctaaaggacatattcaagaagctcgaacctttttcaataggttccgtgaa
gaccatgaaatgttgcacctacgagatctacaaaagttggaaggcgtactatctccttct
catttggaggagatggaatttgctcattctctaaggcagagcaaagttaacataaaaata
tgccagtactcctatgagatgctacttcaatatcttcataagacccaaaccacagtgata
cttgggattatcaatgagcgtatcaacttccaagttttccctggtcagcctagctcaata
tctgatgatgctgaacttgtgacactctcgggaagcacccaggagactgccaatcagata
aataaaaaagaagtccaatgggggttacttgaagattctttagaagaacgcttggagaaa
gctgctggtttgctttcagattctgagaaggctgaggtagaaaccaaggatggtgatgtg
gatgagaataagaaaagaacaactgagggaggaaagcaaggtgcttcaattaagaaggtc
aagaaggacaagactgccggtgcacctgggaaaactctgagggctgaagctaattctgca
tctatggcgccacgagtgaagccagagcttgctttacctataattacaacagaggtggaa
caatctattcttgaagacttgagaaaccgtgtgcagttgagctctgttgctctgccatca
gtcagcttttataccttcattaatacacacaacggtttaaactgttcatcaatatctcat
gatggagctttagttgctggtggattttcagactcttctttgaaggtttgggacatggca
aagctgggacaacaggctggcaatactgttttgcaggatgaaaacgacatgtctactagt
gatccagttacagggcatacaagtgggaagaggtcttatacattatttcaaggtcattct
gggcctgttcactctgccactttcagtcccattggggactttgttctttcatcctctgca
gacacaactattcgattgtggagcacaaaactaaatgccagtcttgtttgctacaaaggt
cacaattacccagtatgggatgttcagtttagtccggttggacattattttgctagttgt
tcacatgatcgaactgcaaggatctggtctatggacagaattcaacctctaaggatcatg
gcaggacatctatccgatgtggattgtgttcaatggcatgccaactgcaactacattgca
actgggtcgagtgacaaaacggttagattgtgggatgtccagagtggggaatgtgttcga
attttcatcggtcacaggagcatgatcctgtctttggcaatgtcacctgatggtcggttc
atggcatccggtgatgaagatggtacaattatgatgtgggacctatcaactggtcgctgt
gttacacctttgattggacacacatcatgcgtttggagccttgctttcagttgtgagggc
tctctccttgcctctggctctgccgattgcacagtgaaattatgggacgtaacttcaagc
acaaagccacctagaacagatgaaaacaaaagtggaactgccaatagacttagatccttg
aagactctaccaaccaaatcaactccagtttacagtttgcggttctctcggaggaatctc
ttatttgcagctggggctctctccaaaagtgcatcaacggcttga
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