Cucurbita pepo subsp. pepo (vegetable marrow): 111797237
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Entry
111797237 CDS
T05351
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03015
mRNA surveillance pathway
cpep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111797237
09123 Folding, sorting and degradation
03018 RNA degradation
111797237
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111797237
03041 Spliceosome [BR:
cpep03041
]
111797237
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
111797237
mRNA cycle factors
Stress granule specific factors
111797237
Spliceosome [BR:
cpep03041
]
Complex C
Other components
Complex C specific factors
111797237
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
RRM_3
RRM_Nup35
RRM_7
DUF4523
PABC_AtC3H46
RRM_MARF1
PH_35
Motif
Other DBs
NCBI-GeneID:
111797237
NCBI-ProteinID:
XP_023535962
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All DBs
Position
LG01:2489200..2494201
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AA seq
656 aa
AA seq
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MAAQVQAQPQNSISGINPAGNGGANFVTTSLYVGDLDPNVTDSQLYDIFNQLGQVVSVRV
CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFSPLNGKPIRVMYSHRDPSIRKSGAGNIF
IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEDSALKAIEKLNGM
LLNDKQVYVGPFLRKQERDSSVGKSKFNNVFVKNLSETTTEEDLNKVFSEFGTITSIVVM
RDADGKSKCFGFVNFENADDAARAVDALNGNVFDDKEWYVGRAQKKSEREVELKNRFEQT
MKEAADKYQGANLYIKNLDDSISDDKLKEVFAPFGTITSCKVMRDPNGVSRGSGFVAFST
PEEASRALMEMNGKIIVSKPLYVALAQRKEDRRARLQAQFSQIRPVPMAASVAPRMPIYP
PGGPGIGQQMFYGQGPPTMIPSQGGFGYQQQLVPGIRPGGGPMPNFFVPMVQQGQQGPRP
GGRRAGAVQQTQQPVPMMQQQMLPRGGRVYRYPPGRGLPDVPMPGVAGGMFSVPYDMGGM
PLRDASLSSQPVPVGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMD
QTEVLHLLESPEALKAKVAEAMEVLRNVAAATQQQQAGNAAADQLASLSLTENLVS
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atggcggctcaggtgcaagctcagcctcaaaattccatttccggcatcaatccggcggga
aatggtggtgcaaattttgtgactacttctttgtatgtcggagatctggacccgaatgtc
acggattcacagctctatgatatatttaatcagttgggtcaggtggtttcggttcgggtt
tgccgagacttgacgacccggcgatctctcggctatggttatgtcaactacagcaaccca
caagatgctgcaagagcattggatgtgctgaacttttccccactaaatggaaaacctatt
agagttatgtattctcaccgtgacccaagcattcgcaaaagtggggctggaaatatattt
atcaagaatttagacaaagcaattgaccataaagctctacatgatacattttcggcattt
ggtagtatcctgtcttgcaaagtggctttagattcctctggccagtcaaaaggctatggt
tttgtgcaatttgacaatgaggattctgctctgaaagctattgagaagttgaacggtatg
ctgttgaatgataagcaagtttatgtaggaccctttcttcgtaaacaagaaagagatagt
tctgttggcaaatccaaatttaacaatgtgtttgtgaagaatctttctgagacaactacg
gaagaagatttgaacaaggttttttctgaatttgggacaatcaccagtatcgttgtgatg
agggatgctgatggcaaatcaaaatgctttggatttgtgaattttgaaaatgctgacgat
gctgctagggcagttgatgccctcaatggaaatgtatttgatgataaggagtggtatgtt
gggagagcacagaaaaaatctgaaagagaagtagaattaaagaaccggtttgaacaaacc
atgaaagaggcagctgacaagtaccagggggcaaacttgtacattaaaaatttagatgat
agcattagtgatgataagcttaaggaggtttttgctccgtttggcactatcacctcgtgc
aaggtcatgcgtgaccccaatggtgtgagcagaggttctggatttgttgcattttcaacc
cctgaagaggcatctagagctcttatggagatgaatggcaaaataattgttagcaaacca
ttgtatgtagcacttgcacagaggaaagaagatagaagggccagattgcaggctcagttc
tctcaaatacgacccgttcccatggctgcttcagttgcccctcggatgccaatctatccc
cctggtggtccaggtatcggacagcaaatgttttatggtcaaggtcctcctacaatgatt
ccttcccaaggtggctttggttatcagcagcagcttgttcctggtataaggcccggtgga
ggtccaatgccaaatttctttgtcccaatggttcaacagggtcagcaagggccgcgtcct
ggtggcagacgtgcaggagctgtccagcaaacccagcagcctgttccaatgatgcaacaa
cagatgttgcctagaggaggacgtgtctatcgttatcccccaggaagaggtctgcctgat
gttcctatgcctggtgttgctggaggcatgttttctgttccatatgacatgggtggtatg
ccgttgcgtgatgcatccctctcctctcaacctgtccctgtaggtgctctggcatctgct
ttggcaaatgctactccagaccaacagagaacaatgctgggggagaatctttacccgctt
gtggaacaattggagccagacaacgcagccaaggtaactggaatgcttcttgagatggac
cagactgaggtcttgcatttactcgagtccccggaggctttgaaggcgaaagtagctgag
gctatggaggttttgaggaatgtagctgctgcaacacagcagcagcaagcaggcaatgca
gcagctgatcagctagcctctctgtcgctgaccgagaacctcgtgtcgtga
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