Cucurbita pepo subsp. pepo (vegetable marrow): 111797517
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Entry
111797517 CDS
T05351
Name
(RefSeq) Niemann-Pick C1 protein-like
KO
K12385
Niemann-Pick C1 protein
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
111797517
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
111797517
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cpep02000
]
111797517
Transporters [BR:
cpep02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
111797517
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NPC1_N
Sterol-sensing
NPC1_MLD
Patched
Folate_rec
Motif
Other DBs
NCBI-GeneID:
111797517
NCBI-ProteinID:
XP_023536302
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Position
LG06:97421..112152
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AA seq
1303 aa
AA seq
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MRLRLGFIASIYLLQVLYFVLAYAERSNIRLLLSTNGTSGEKHSEGYCTMYGICGKRPDG
KVLNCPTGTPSVQPDNLLSSKIQSLCPTITGNVCCTEEQFDTLRSQVMQAIPFLVGCPAC
LRNFLNLFCELTCSPNQSLFINVTSVLKVNSSLTVDAIDYYVADAFGEGLFESCKDVKFG
TMNTRAMQFIGAGAQNFKEWFAFIGKRASPSMPGSPYAIGFPSTMSESSGMKHMNVSAYS
CGDTSLGCSCGDCPSAPVCSSTSTPVFHRKNSCSVRIGSLKVKCVDFALCILYIIIASAF
LGWSLFYRKSQKSPSSGTKTMPNIMDGSSLHSATRQKDESLPMQMLEDAPQIRSRIQLSV
VQGYMSNFYRKYGKWVARNPTLVLISSLAIVLLLCLGLIRFKVETRPEKLWVGPGSRASQ
EKEFFDTHLAPFYRIEQIIIATVPDTEHGKPPSILNDNNVKLLFGIQKKIDGIRANYSGS
SVSLNDICLKPLDRDCATQSVLQYFQMNPENFDNYGGVEHLEYCFEHYSSADSCRSAFKA
PLDPSTALGGYSGNNYSEASAFLITYPVNNAINKEGNESGRAVAWEKAFIQLAKTELLTM
VQSQNLTLSFSSESSIEEELKRESTADVITILISYLVMFAYISLTLGDRPHLSTFYVSSK
VLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQS
VELPLEGRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQ
VTAFVALIVFDFLRTEDKRVDCFPCIKNSGYAGSDKGITQRNPGLLARYMKEIHAPVLSI
WGVKIVVISIFVGFTLASIALCTRIEAGLEQKIVLPKDSYLQGYFNNISEHLRIGAPVYF
VVKNYNYSKDELFFFFFFFFFFFXQTNQLCSISQCDSNSLLNEIAKASLIPESSYIAKPA
ASWLDDYLVWISPEAFGCCRKFTNGSYCPPDDQAPCCASNGGSCGLNGVCKDCTTCFLHS
DLHGGRPSTTQFKEKLPWFLSALPSADCAKGGHGAYTSSVELKGYENGVIQASSFRTYHT
PLNKQVDYINSMRAAQELSSRVSDSLKIEVFPYSVFYMFFEQYLNIWRTALINLAIAIGA
VFIVCLIITCSLWTSAIILLVLAMIVVDLMGVMAILNIQLNAISVVNLVMSVGIAVEFCV
HLTHAFSVSSGDKDQRMKEALSTMGASVLSGITLTKLVGVLVLCFSRTEVFVVYYFKMYL
ALVLLGFLHGLVFLPVVLSLLGPPSRCVFVEQQDNRPSTSSRS
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgaggctccgtttggggtttatcgcgtcaatttatctcctccaggttctatattttgtc
ctagcgtatgcagagaggtctaacatacggttgctgttatctacgaatggcacatcaggg
gaaaaacattctgaaggatattgcacaatgtatggtatctgtggaaaacgacctgatggt
aaggtgttgaactgtccgactggtaccccatctgtgcagccagataatcttctttcatca
aagattcaaagtctatgtccaactattactggcaatgtttgttgcacagaagaacaattt
gacaccctacgatcacaggttatgcaggctattccgtttcttgttggttgtccagcatgc
ttaagaaactttttgaacctattctgtgagcttacctgttctccaaatcagagcttattc
atcaatgtgacttctgttttaaaggttaatagcagccttacagttgatgccattgattat
tatgtagctgatgcttttggtgaagggctatttgagtcctgcaaagatgtaaaatttggt
acgatgaacacacgagccatgcaatttattggtgctggtgctcaaaattttaaagagtgg
tttgcttttatcggtaaacgagctagtcctagcatgcctggttcaccatatgctattgga
tttccctctaccatgtctgagtcatctggaatgaagcatatgaatgtatcggcttattct
tgtggagatacttcactaggatgttcctgtggtgattgcccttcagctcccgtctgcagc
agtacttcaacccccgttttccatagaaaaaattcttgttcagtgagaattgggtctctc
aaggtcaaatgtgtcgacttcgctctgtgtatcctatacattataattgcctctgctttt
cttggatggagtttgttttatcgcaaatctcaaaagagcccttcttcgggaactaaaaca
atgccgaatattatggatggtagcagtctccattctgctactaggcaaaaggatgaaagt
ttgccaatgcagatgcttgaagatgctcctcaaatcagaagtaggattcagctttcagtt
gtccagggatacatgtccaatttttataggaaatatgggaaatgggtggctagaaatcca
acattggtgttgatttcatcacttgccattgttcttcttctgtgtttaggcctcattcgt
ttcaaggtggagacacggcctgagaagctatgggtaggaccaggaagcagagcatcccaa
gagaaggaattttttgacacacatctagcccctttttataggattgaacagattataata
gccacagttccagatactgagcacggaaagccgccaagtattttgaatgataacaatgtt
aagttactgtttggcatacaaaagaagatagatggtattcgagctaattattctggttca
agcgtatctctaaatgacatttgcttgaagccattggatcgtgattgtgccacccagagt
gtcctgcagtatttccagatgaatccagaaaattttgataactatggaggagtcgaacac
cttgaatattgttttgagcattattcctctgcagacagttgcaggagtgcatttaaagct
cctcttgatccaagcaccgcattagggggatactctgggaacaattattcagaagcttct
gcgttcttaataacttatccagtgaataatgctattaataaagaagggaatgaatctggt
cgagctgtggcttgggagaaagccttcattcagttggctaagaccgagttattgacaatg
gtgcaatctcaaaatttgacgctttctttttcttcggaaagttccattgaagaggaatta
aaaagagagagtactgctgatgtcatcacaatcttgataagctatcttgtgatgtttgct
tacatatctcttactctgggcgatagaccacatttatctactttttatgtttcatcaaag
gtgttacttggtctctccggagttgttcttgtcatgttgtctgttcttggatcagtcggg
tttttcagtgcaattggagtcaaatctactctaatcattatggaagttatccctttcctt
gttctggcagttggagtggataacatgtgtatattggtacatgctgttaaacggcagtca
gtagaattgcctttagaaggacgaattagcaatgcgctcgtagaagttggaccatccata
acactagcaagtttatctgaggttcttgcatttgcagttggaagtttcattcctatgcca
gcatgccgtgtcttttccatgtttgcagcattggccgttcttctggacttcctgctgcaa
gttacagcttttgttgctctcatagtatttgatttcttaagaactgaggataagagagtt
gattgttttccgtgtattaagaactcaggatatgctggaagtgataaaggcatcactcag
aggaatcctggcttgttagcccgatacatgaaggagatccatgcccctgtgcttagcatc
tggggagtcaaaatagttgtcatatccatctttgttgggttcacattggcaagcattgca
ctatgcaccagaattgaagctggtttggaacaaaagattgtcctccccaaagattcttat
ctccaggggtacttcaataacatttctgaacatctcagaataggtgcaccagtatacttc
gttgtaaagaactacaattatagcaaggatgaattgtttttttttttttttttttttttt
tttttttttngacagacaaaccaattatgctccatcagtcaatgtgactcaaactctctt
ttaaatgagattgcaaaagcttcactaataccagagtcaagttacattgctaaaccagct
gcttcatggcttgatgattatcttgtgtggatatctccagaagcatttggatgttgtcgg
aagttcacgaatgggagctattgcccccctgatgatcaggccccttgctgtgcttctaat
ggtggttcttgtggtctgaatggagtatgcaaagattgtacaacgtgctttcttcactcg
gatctgcatggtggtaggccatccactacacaatttaaggagaaattgccatggttcctc
agtgctctaccttctgctgattgtgctaaaggaggtcatggggcatacactagtagtgtt
gaactgaaaggctatgaaaatggtgttattcaagcatcttctttcagaacataccatact
cccctgaataagcaggttgactatattaattcgatgagggctgctcaagaattgagttca
agggtttctgattctttgaagatagaagtctttccgtattctgtattttacatgtttttt
gagcaatacctcaatatatggagaacagcactgatcaaccttgccatcgctattggtgcg
gtgtttattgtgtgtctgatcatcacatgcagcttatggacctcggctatcatcttgttg
gtgttggcaatgattgttgtggacctcatgggcgtgatggcaattttgaatatccaattg
aacgcaatctctgttgtcaatcttgtcatgtctgtgggaattgctgttgaattttgtgtg
catttgacacatgctttctcggttagcagtggagataaagaccaacgcatgaaggaggct
ctcagtacaatgggagcatctgttcttagtggaatcacactaacgaagctagtcggggtc
cttgtactttgcttctccaggactgaagtttttgtggtttattatttcaaaatgtacttg
gcactagtacttcttggatttttgcatggtctcgtattcttgccggtagtgttgagcttg
ctcggtccaccttcaagatgtgtgttcgtcgagcaacaggataatcggccctctacttcg
tctcggtcatga
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