Cucurbita pepo subsp. pepo (vegetable marrow): 111798036
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Entry
111798036 CDS
T05351
Name
(RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 1
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111798036
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111798036
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
111798036
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUDIX_2
Motif
Other DBs
NCBI-GeneID:
111798036
NCBI-ProteinID:
XP_023536755
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Position
LG07
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AA seq
217 aa
AA seq
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MGDDGRMHAMEDDESATADQIRAIDIYPLSNYYFGSKEPLVFKDKTLADRVIRMKSNYAA
YGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPGGRLRPNESDIDGLKRKLSRKLSANG
APDASDWEVGDCLGTWWRPDFETLLYPHLSNNVKGAKECTKLFLVKLPESRKFIVPKNLK
LIAVPLCQLHENHKMYGPVISGIPQLLSKFSFNIIET
NT seq
654 nt
NT seq
+upstream
nt +downstream
nt
atgggagacgacggacgtatgcatgctatggaggatgatgaatctgccactgccgaccaa
atccgcgccatcgatatttaccctctcagtaactactacttcggatccaaagagcctctt
gttttcaaggacaagaccttggctgatcgcgttatcaggatgaaatccaattatgctgct
tatggattgaggacttctgtcgaagcagttttgctggttgagctattcaagcatcctcat
gtgttgctgttgcaaatacgaaattcaattttcaatcttcccggcggtcgcctaaggccc
aatgaatctgatattgatggcttgaagcgaaagttatcaaggaagctttctgccaatgga
gcccctgatgcatctgattgggaggtgggcgattgcctcggtacgtggtggaggcctgac
ttcgaaaccttgctctatccacatttgtccaacaatgtaaaaggagccaaggagtgcact
aaacttttcctggtcaaattgccggagagtcgaaaattcattgtgccaaagaaccttaag
ttgattgcagttcctttatgccaacttcacgaaaaccataagatgtacgggccagttata
tcgggtattccgcagttactttccaagttttccttcaacatcatcgaaacttaa
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