Cucurbita pepo subsp. pepo (vegetable marrow): 111798222
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Entry
111798222 CDS
T05351
Name
(RefSeq) probable rhamnogalacturonate lyase B isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
111798222
Enzymes [BR:
cpep01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
111798222
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
DUF8186_C
Motif
Other DBs
NCBI-GeneID:
111798222
NCBI-ProteinID:
XP_023537007
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Position
LG07:complement(1116327..1124533)
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AA seq
641 aa
AA seq
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MPPLGVQLSIAEHQVTMDNGIVQVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGYWDLV
WNPSASATGSFDVIKATDFEVIVENEDQVELSFTRKWDLSLEGKLVPLEIDKRFIMLRGS
SGFYSYAIYQHLKEWPGFNLGETRLAFKLRKDRFHYMAMADNRQRSMPLPDDRSPPRGRA
LAYPEAVLLVDPIESELQGEVDDKYQYSCDNKDSGVHGWISTDPPIGFWLITPSNECRSG
GPVKQNLTSHVGPTTLAVFISAHYTGEDLVPKIGAGEAWKKVFGPVFIYLNSTYDSSDAL
QLWEDGKSQASIEVQSWPYSFPASEDFPKSNQRGNISGRLLVKDSYVSEDYIPANGAFVG
LAPPGDVGSWQRESKGYQFWSRADEDGYFLIDHVRPGDYNLYAWVPGFIGDYRYDSIINI
TEGSQIDVDEIIYEPPRAGATLWEIGVPDRSAAEFYVPDPNPNYVNKLYLNHPDKFRQYG
LWERYSELYPDADLVYTVGVSDYTKDWFFAQVTRKTENGTFKGTTWQVKFELDNVDSQAT
YQLRVALASASLAELQVGVNDPKAKPVFSSGLIGRDNSIARHGIHGLYWLYNVNIPGNRL
VSGDNTIFFTQPRSTSPFQAIMYDYIRLEAPPPPSSAHGLL
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgccgccactgggtgtgcaactctccattgcagaacatcaggtgacaatggacaatggc
atagtccaagtcacgttgtcaaacccagatggcatagtgaccggaattcgatacaatgga
gttgacaacttgctcgaagttctcaatgacgaatctaacagagggtactgggacctcgtg
tggaacccatcagcctctgcaactggatcgtttgatgtgataaaggctacagattttgag
gttatagtggaaaatgaagaccaagtggagctctcctttacgagaaaatgggatctgtct
ctcgagggaaagcttgtgccgttagagattgataaaaggtttataatgcttcggggttcg
tctggattctattcgtatgctatttaccaacacttgaaagaatggcctggtttcaacctt
ggtgaaaccagactcgccttcaaactcagaaaagacaggttccattatatggccatggca
gacaacagacagagatccatgccacttccagatgaccggtcaccaccgagaggccgagct
ctggcctatccagaggctgtcctgctcgtcgaccccatcgaatccgagcttcagggagag
gtggatgacaagtatcagtattcatgcgataacaaagatagcggcgtccatggatggata
tccaccgacccgccaatcgggttctggctaatcacccccagcaatgagtgccgttccggt
ggacccgttaaacagaacctgacttcgcacgtcggcccgaccactcttgctgtttttatt
agcgcccattacacgggagaggatctggtgccgaaaatcggagccggcgaggcgtggaag
aaagtcttcggtcctgtgtttatctatctcaactccacttacgattctagcgacgcactt
cagctctgggaagatggcaaatcacaggcatcgattgaagtccaaagttggccatacagc
ttccctgcttcggaggattttccaaagtcaaaccaacggggtaatatcagtggcagacta
ttagtcaaagatagctacgttagtgaagactacattccagcaaacggtgcgtttgttggc
ttagctccaccaggagacgtaggttcatggcaaagagagagcaagggttaccaattttgg
agcagagcagatgaagatggatactttctcatcgaccacgtaaggcctggcgactacaat
ttatatgcatgggtccccggttttattggagattatcgttacgattctatcatcaacatt
acagaaggtagtcagatagacgtcgatgagataatatacgagcctccaagagcaggggcg
acactgtgggaaattggagtcccggatcgctcagcagcagagttctatgttccagatcca
aatcccaactacgtcaataagctctatcttaaccatcccgataagtttcgccagtatggt
ctgtgggaaaggtacagcgaattgtatcccgatgcagacttggtgtataccgtcggcgtc
agtgattataccaaggactggttcttcgctcaggttaccaggaagacagaaaacggaaca
ttcaagggaacaacatggcaggtgaagttcgagctggacaacgtggacagccaagcaact
taccagcttcgggtcgcactggcctccgcttctctcgcggaattgcaggttggagtaaat
gacccgaaagcaaagccggtgttctcaagtgggctaatcggaagggacaattcaatcgcc
agacacggcattcacggcctgtactggctctacaacgtgaatattccgggaaaccggctg
gtctccggcgacaacaccatcttcttcacgcagccgagaagcaccagccctttccaagcc
attatgtacgactatattcgtctggaagctcctccacctccgtcctccgcccatggtttg
ttataa
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