Cucurbita pepo subsp. pepo (vegetable marrow): 111798314
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Entry
111798314 CDS
T05351
Name
(RefSeq) protein CHROMATIN REMODELING 20 isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cpep03000
]
111798314
03036 Chromosome and associated proteins [BR:
cpep03036
]
111798314
Transcription factors [BR:
cpep03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
111798314
Chromosome and associated proteins [BR:
cpep03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
111798314
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Lyase_aromatic
Motif
Other DBs
NCBI-GeneID:
111798314
NCBI-ProteinID:
XP_023537143
LinkDB
All DBs
Position
LG07:complement(7252576..7283653)
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AA seq
1482 aa
AA seq
DB search
MTEKHEDVEDVGSVSTDSFIDDSEDDGPSTSGQDEQLHLEEPLTEQEIEDLMAEFLEVES
KAAEAQEALEKESLSKVENEVREELALNLNGDDLETAVANEMAILVEEWEGVLDELEIES
AQLLEQLDGAGVELPSLFKQIESQATYGCYTEAWKKRIHWVGSQVTGDLLASVSDAEKTL
QTQRPVRRRHGKLLEEGASGYLQKKFSTHEMEGNGSENLEVDWCSLNKVFSEGSNNNETL
FGSKNWASIYLASTPQQAAEMGLKFPGVDEVEEIDDVDGNSSDPFVAAAIANEKELDLSE
EQKRNFRKVKEEDDAIFDRKLQIHLKQKRYQKRCKQEVFQKDVSTVDKVIQRDEEQLVSP
VDCLNPVLDEKTEGNRKGLSDDENADGASSDIDMDGSLEKTASLHPSALSDFVEPLGSKR
LNDTEELIIQTKKSRTNGVHEDESPLIKEDSAFNPTTLDTLCNTKQNDHGADSLPSECLN
EKIRCTACDQMVIKAHAHPFLNVIVCEDCKCLMDDKKNVKEPDCSECYCGWCGRNADLVS
CKSCKTLFCISCIRRNLGVECLLKAQSSGWHCCCCRPSLLQSLTMQLEEVLGSGDLTGSS
SDSDSDNSHADINATISSKRRRKKKIRRILDDAELGEDTKKKIAIEKERQERLKSLKVQF
SSDSKRMSSAGFCGNLPEGASAEVLGDASTGYIVNVVREKGEEAIRIPPSISSKLKTHQV
SGIRFMWENIIQSVRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRNVDLGLRTAVI
VTPVNVLHNWRQEFFRWKPSELKPLRVFMLEDVPRERRAELLAKWRAKGGVFLIGYSAFR
NLSLGKHVKDRHMAKEICHALQDGPDILVCDEAHMIKNTKADVTQALKQVKCQRRIALTG
SPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLEDVKIMNQRSHILY
EQLKGFVQRMDMSVVKKDLPPKTVFVISVKLSPLQRKLYKRFLDVHGFNNGKDSSELLRK
RSFFAGYQALAQIWNHPGILQLTKEDKYSVKREDAVENFLADESSSDENIDSNIGIGEKP
ANANGNHQDKYAGGFFVKDWWSGLLHASSYKELDYSGKMVLLVEILTMCSELGDKALVFS
QSIPTLDLIEFYLSRLPRRGKRGKFWKKGKDWYRLDGRTESSERQRIVERFNESLNKRVK
CTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRFLAHGTM
EEKIYKRQVTKEGLAARVVDRQQVYRTISREEMLHLFEFGDDENPEGATELDLGNGHESH
QTMTGNHGNVLKQKGPLSHGSCSSDKLMETLLGKHHPRWVANYHEHEKLLQENEEEKLSK
EEQDMAWEVYRKSLEWEEVQKVSPGDTTAEQKLTTSIVAGPAPETIDLAQSRARNRFVTR
KCTNLSHLLTLRSQGIKVGCSTICGECAQEISWEELNKDSKK
NT seq
4449 nt
NT seq
+upstream
nt +downstream
nt
atgacggaaaagcacgaagacgttgaagatgtaggcagtgtgtctaccgattcttttatc
gatgactctgaagatgatgggccatccacatctgggcaggacgagcaattgcatctcgag
gaacctttgacagagcaagagatagaggatttgatggctgagtttttggaagttgagagt
aaggccgcagaggctcaagaagcacttgaaaaggagtctctttccaaagtggagaatgaa
gttcgagaagaattggcgttgaatcttaatggtgatgatcttgaaactgcggttgcaaat
gaaatggctattttggtagaagagtgggaaggtgtgcttgatgaacttgagattgagagt
gctcagttattggagcaacttgatggtgctggtgtcgagttaccgagtctcttcaaacaa
attgaaagtcaggctacttatggttgctatactgaagcttggaaaaagaggatacactgg
gtagggtctcaagtaactggcgatcttcttgcatctgtatccgacgcagagaagaccctt
caaacccaaaggcctgtaaggagacgacatggtaaacttttggaagagggcgcaagtgga
tatctgcagaagaaattctccactcacgagatggagggaaatggatcagaaaatttggaa
gttgattggtgctctcttaataaagttttttcagaaggctcaaacaacaatgaaacatta
ttcggcagcaagaattgggcttctatttacttggccagcactccgcagcaggctgcagaa
atgggactaaaatttcctggagttgatgaggtagaggaaatagatgatgttgatggaaat
tctagtgatccgtttgttgctgctgccattgcaaatgaaaaagagttggatctttcagaa
gaacaaaagagaaatttcagaaaggtcaaagaagaagatgatgccatttttgatagaaaa
ctccaaatccatttgaaacaaaagcgatatcaaaagagatgtaaacaggaggtctttcaa
aaagatgtttccactgttgataaagtgatacaaagagatgaagagcagcttgtatctccg
gttgactgtttgaaccctgttttagatgagaaaactgaaggaaatcgaaagggcctctcg
gatgatgaaaatgcagatggtgcttcaagtgatattgacatggatgggtctttggagaaa
acagcttctttgcatccttcagcgttatctgattttgtggaacctttaggttcaaagcgt
ttaaacgatactgaagaactgattattcaaactaaaaagagtcgtaccaatggtgtacat
gaggatgaaagtcccctgataaaggaggattctgctttcaatccaacaacgttggacacc
ctatgcaacaccaaacaaaatgaccatggtgctgattctcttccatcagagtgcctgaat
gagaagatccgttgtactgcgtgtgatcaaatggttattaaagcgcatgcacaccctttt
ctgaacgtaattgtttgtgaggattgcaaatgtttgatggatgacaagaagaatgtaaag
gaacctgattgctctgagtgctactgtggatggtgtgggcgaaatgctgacttagtaagt
tgtaaatcatgcaagacactattttgtatcagttgcataaggaggaacctcggtgtcgag
tgcttgctcaaggcccaatcttctggctggcattgttgttgttgtcgcccaagtctcttg
caatccttgaccatgcagttggaggaggtcttaggatctggagacttgaccggttctagc
tctgacagcgattcagacaactcacatgcagatattaatgcaaccataagctcaaagaga
aggcgtaagaaaaagatccggcggatacttgatgatgctgaattaggagaagatactaaa
aagaaaattgccatagaaaaggaacgccaagaacgtctaaaatcactaaaagttcagttt
tcctctgattctaaaagaatgagctctgctggcttttgtggtaatctacctgaaggtgct
agtgctgaagtccttggtgatgcttcaacgggatatatagtcaatgttgtaagggagaag
ggggaagaagcgattagaattccacccagcatttcatcgaagttgaaaacccatcaggtt
tctggaataagatttatgtgggaaaatatcattcaatcagtaaggaaagtgaagtctggt
gataaaggtcttggatgcattcttgctcacacaatgggccttggtaaaacttttcaggtt
atagcattcttgtacactgcaatgaggaatgtggacttgggtttacgaactgcagttata
gtcacccctgttaatgtgttgcataattggcggcaagaattctttaggtggaaaccttca
gaattaaagcctcttcgtgttttcatgcttgaagatgtgccaagggagaggagggcagag
ttgcttgctaagtggagagctaagggtggtgtctttttaattggttatagtgctttccga
aatttatctcttggtaaacatgtcaaagaccggcacatggccaaagaaatttgccatgcc
ttacaggatggacctgatattcttgtatgtgacgaggcccacatgattaagaataccaag
gctgatgtaacccaggcattgaaacaagtgaaatgccagaggaggattgcattaactgga
tcaccactacagaacaatctcatggagtattattgtatggttgattttgtgagagaaggt
ttcctgggaagtagccatgaatttcggaatcgcttccagaaccctatagagaatgggcag
catactaattcaactctggaagatgttaaaataatgaaccagaggtctcatatcctatat
gaacagttgaaagggtttgtacaaaggatggacatgtctgtggtgaagaaggacttgccg
cctaaaactgtctttgtgatatccgttaaactttctcccttacagaggaagttgtacaaa
agatttcttgacgtgcatggttttaataatggcaaagattctagtgaactgttgaggaag
aggagcttttttgctggataccaagcacttgctcagatttggaatcatcctggaatcctc
caattgacaaaagaagacaaatattccgtgaagcgtgaagatgctgttgaaaattttctt
gcagatgaaagctccagtgacgaaaacatagattctaatattggcattggagagaagcca
gccaatgccaatgggaatcatcaggataaatatgctggtggctttttcgttaaggattgg
tggagtggtctgcttcacgcaagtagttacaaggagctggattacagtggaaaaatggtt
ttgctagtagagatcttaactatgtgctctgaattgggggataaggcgttagtattcagc
cagagcattcctacgcttgacctaattgaattctatctttcaagattgcccagacgaggg
aagagaggaaaattctggaagaagggtaaagattggtataggctagatggaagaacagag
agttctgaaagacagaggattgttgagaggtttaatgagtctctaaataagagggtaaaa
tgtaccctgatatcaactagagctggatcattgggtatcaaccttcattctgctaaccgc
gtcatcatagtcgatggctcttggaatccaacttatgatcttcaggctatttatcgagct
tggagatatggccaaacgaaacccgtgtttgcttaccgatttttggcgcatggaacaatg
gaagaaaaaatttacaagcgtcaggtaacaaaggagggactggctgcaagagttgttgat
cgccaacaggtataccgaacgatttctcgggaagaaatgttgcatctttttgaatttggt
gatgatgagaatcctgagggtgccactgagttggacctaggaaatggacatgaatctcac
cagactatgactgggaatcacggcaatgtgctgaagcagaaagggcctctttcacatgga
agttgctcatctgataagttgatggaaactttacttggcaaacaccatccaaggtgggtt
gccaattaccatgagcacgaaaaactactccaagaaaatgaagaggaaaaactatctaag
gaggagcaagacatggcatgggaagtgtacagaaaatcattagaatgggaagaagtccaa
aaagtttcaccaggcgacactacagccgagcaaaagctaaccacatcgatcgtcgcaggt
ccagcacccgagaccatcgatctggcacaatcaagggcaaggaaccgattcgttactcgt
aaatgcacaaatctttctcacttgctgacactcagaagccagggaataaaggttggttgt
agtacaatatgtggggaatgtgcacaagagataagctgggaagagctcaacaaagatagc
aagaagtga
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