Cucurbita pepo subsp. pepo (vegetable marrow): 111798612
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Entry
111798612 CDS
T05351
Name
(RefSeq) protein RDM16-like isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111798612
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpep03041
]
111798612
Spliceosome [BR:
cpep03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
111798612
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
Motif
Other DBs
NCBI-GeneID:
111798612
NCBI-ProteinID:
XP_023537630
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Position
LG01:6643300..6648749
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AA seq
899 aa
AA seq
DB search
MDRVSEKEKSSKRSREERDRDHKHRSRDAEEKHFSKDEKHRESDHHHRRRHHRSDRDSKR
ERSHEPRDHKHRRERSYDHREDRERSRDRDSSKRERSNEPRGVREGSEGRGKLREVRHEQ
SDNDHEQEGSFEPTQNSVRSNKRKERGGSEDRFDGGEKKARASEDGKDLRRIEDGNEVNG
AETDAKKERRRLADDEKDGEANLSGRGRRERKRFEDRVEEEDNGGNAEDGKVQFGGTIDD
KGSLGNGAMVEPINMSSASVPQNFLHHSHPLPIKVSSISTTNENKGVSITRSHEVHGKSS
TDGTSSNAGKSGNLSLDALAKAKKALQMQKELAEKLKKIPLMKKVGGSSSASSSVVKSEE
KAKPGVLGQSTTTNNATTLSIGVASSSSTLPTAASALDGGINVLAGLTSIPHFEAVKRAQ
ELAARMGFRQDPEFAPLINLFPGNTATDVAVPQKLVKAPVLCLDALGREIDEQGNVVNIT
KPSNLSTLKVNINKQKKDAFQILKPELDVDPDSNPHFDERMGINKTKLLRPKRMSFQFVE
EGKWSKEAETIKLRSKFGEAQAKERKEKQAQLAKAKAAPDINPNLIEVSERVMVKEKTKE
PIPEIEWWDVPLLHSGTYEDVGDGVVANEKLRKDKITIYVEHPRPIEPPAEPAPPPPQPL
KLTKKEQKKLRTQRRLAKEKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTKLEK
EIRAAAAEREQAHIDRNVARKLTPAERREKKERKLFDDSSSLETIVSVYKINDLSHPQAR
FKVDVNARENRLSGCAVICDGISVLFVEGGSKSIKRYGKLMLRRINWADSVKEEDEEEEH
EDKPVNKCSLVWQGSVAKSSFNRFSIHECMTEAAARKIFADAGVGHYWDLAVNFSDDQI
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atggatagggtttccgagaaggagaaatcgagcaagcgttctcgggaagaacgcgatcga
gaccacaagcatcgaagtcgagacgccgaggaaaagcatttctctaaggatgaaaagcat
cgtgaatccgatcaccaccatcgccggcggcaccatcgatcggaccgtgattcgaagcgc
gagcgttcccatgagccgcgtgatcacaaacatcggcgggaaaggtcttatgatcatagg
gaggatagagaaagaagtagagacagggattcgtctaagagagagcggtcaaatgaaccg
agaggggtgagagagggaagtgaagggcggggcaagctgcgcgaggtgaggcacgagcaa
tcagacaatgatcatgaacaggaagggtcgttcgagccaacccagaattctgtacgctca
aacaagaggaaggagaggggaggaagtgaggataggtttgatggcggtgagaagaaggct
agggcttcggaagatggaaaggatcttagacggattgaagatgggaatgaagtgaatgga
gctgagacggatgcgaaaaaggagcggaggagattggctgacgatgagaaagatggcgaa
gcgaacttgagtggtaggggaaggagggagaggaagcggtttgaggatagggtagaggaa
gaggataatggtggaaatgccgaggatgggaaagttcagtttggaggcaccattgatgat
aaagggtcactggggaatggagctatggtagaacccatcaatatgtcatcagcaagtgtg
ccccagaattttttacaccatagtcatccccttcctatcaaggtatcttcaatttctacc
acaaatgaaaataagggagttagtattaccagatctcatgaggttcatggaaaatctagt
acagatgggacatcttcaaatgctgggaaaagtggaaatctctctctcgatgctttagct
aaagctaagaaagccttacagatgcagaaagaattggccgagaagttgaagaaaattcct
ctgatgaagaaggttggggggtcaagttctgcaagcagctcagttgtgaaatcggaggag
aaagctaaacctggtgtattggggcaatcgacaactacaaataatgctacaaccctttca
atcggggtagcatcaagttcgtcgacattacctactgctgccagtgcacttgatggtggt
attaatgttctggctggccttacctctataccccattttgaagctgtcaaacgtgcacag
gagctcgctgctaggatgggatttcgacaggatccagagtttgctcctctcataaatttg
tttccagggaacacagcaacggacgttgctgttccacagaagctagtcaaggcccctgtt
ctttgtcttgatgcacttggcagggaaattgacgaacaaggaaatgttgtcaatataacc
aaacccagcaaccttagtactcttaaggttaacatcaacaagcaaaaaaaggatgcattt
cagattcttaaacctgaacttgatgtggatccagattcaaaccctcattttgatgagagg
atgggtataaataaaactaaattgctgaggccgaagagaatgagtttccagtttgttgag
gaagggaaatggtctaaggaggctgaaaccataaaattgaggagtaaatttggagaggca
caagctaaagaacgaaaagagaagcaagcacaattggccaaggcaaaggctgcacctgat
ataaatccgaatttgatcgaagtatcagagagagttatggtgaaggaaaaaacgaaagaa
ccaattcctgaaattgagtggtgggatgtcccccttttgcattccggcacatatgaggat
gtgggagatggtgttgtggccaatgaaaaattaaggaaggataagattactatatatgtg
gagcatcctcgtcctattgaacctcctgctgagccagctcccccacctcctcaaccccta
aagctaacaaagaaggagcagaaaaaacttcgtacacagcgtcgtctagcaaaggagaaa
gatagacaggaaatgattagacaaggcctgatagaaccacctaaaccaaaagttaaaatg
agcaatttaatgaaagttcttggctcagaagcaacccaagatcctactaaactcgagaag
gagattcgtgctgcagctgctgagagggaacaagctcacatagatagaaatgttgcacga
aaacttacccctgcagagcgccgcgagaagaaagaacgcaaactttttgatgattcaagt
tcacttgagacaattgtgtctgtttacaaaatcaatgatttatcacacccacaggcccgg
tttaaagtcgatgttaatgctagagagaaccgtttgtctggatgtgctgtgatatgtgat
ggcatcagtgtactgttcgttgaagggggaagcaagtccatcaaaaggtatgggaagctt
atgctcaggcgtataaattgggccgattctgtgaaagaggaggacgaggaggaggaacat
gaagacaagcctgtcaacaaatgttcattggtatggcaaggaagtgttgccaagtctagc
ttcaatagattttctatccacgagtgcatgaccgaggcagctgctcggaagatttttgct
gatgctggcgtcggtcattattgggatcttgccgttaacttctctgatgatcaaatataa
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