Cucurbita pepo subsp. pepo (vegetable marrow): 111798845
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Entry
111798845 CDS
T05351
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03013
Nucleocytoplasmic transport
cpep03015
mRNA surveillance pathway
cpep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111798845
09122 Translation
03013 Nucleocytoplasmic transport
111798845
03015 mRNA surveillance pathway
111798845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111798845
03041 Spliceosome [BR:
cpep03041
]
111798845
Enzymes [BR:
cpep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111798845
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
111798845
Spliceosome [BR:
cpep03041
]
Complex C
Other components
EJC/TREX
111798845
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
111798845
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
111798845
NCBI-ProteinID:
XP_023537959
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All DBs
Position
LG07:complement(1917540..1922248)
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AA seq
442 aa
AA seq
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MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVL
CHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILAL
TRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVTWIIPMYFVSHYTIYIGLPKCVYFVFLQKSYRLAELEDLAPKGL
QLLLYHLQLILMFSTMFKKGSK
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaacaagagacaacgaatatgaggaagagctcctcgactatgaggaagaggaa
gagaaggcacccgattccgttggagctaaagtcaacggtgaagctggaaagaagggttat
gttggaattcacagttcgggattcagagacttcctattgaagccggagcttctccgtgct
attgtggactcgggatttgagcatccatctgaagtgcaacacgaatgtattccccaagct
atcctcggcatggatgttatttgtcaagctaaatctggtatgggtaaaactgctgttttt
gttctgtcaacactgcagcagattgaccctgttgctggccaagtttctgccctagttctg
tgccatactagggagcttgcgtaccagatctgtcatgagttcgaaaggttcagcacttat
cttcccgatctgaaagttgcagtcttctatggtggagtgaatattaaaattcacaaagat
cttctgaagaacgaatgccctcatattgttgttggaacaccgggaaggatattggcattg
acaagagataaggacctttccctgaagaatgtgcggcattttatcttggatgaatgtgac
aagatgcttgagtcacttgatatgcggagggatgtacaggaaatcttcaagatgactcct
catgacaaacaagttatgatgttttcggcgacactgagcaaagaaatccgcccagtttgc
aagaagtttatgcaagatccaatggaaatatatgtcgatgacgaggcaaagttgacattg
catggtcttgtccagcactacatcaaactgagcgagatggagaaaaatcggaagttgaac
gacctccttgatgcattggacttcaatcaagtggttatttttgttaaaagtgttagtagg
gcagctgagctggataagttattggtggagtgtaattttccatctatatgtatccattct
ggcatgtctcaggaagagaggttgactcgttacaagggttttaaggaaggacataagcgg
attcttgtggcaacagatttggttggtcgaggaattgacattgaacgtgtaaacattgtc
atcaactatgacatgccagattctgctgatacttacctgcacagggtaacgtggatcatt
cctatgtattttgtttctcattataccatctacattgggcttccaaagtgtgtatatttt
gtcttccttcaaaaatcttacaggttggcagagctggaagatttggcaccaaagggcttg
caattacttttgtatcatctgcagctgattctgatgttctcaacaatgttcaagaaaggt
tcgaagtag
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