Cucurbita pepo subsp. pepo (vegetable marrow): 111799328
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Entry
111799328 CDS
T05351
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
cpep04812
]
111799328
Cytoskeleton proteins [BR:
cpep04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
111799328
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Katanin_con80
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_EML
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_IFT140_1st
Beta-prop_SPT8
WDR90_beta-prop_4th
eIF2A
Beta-prop_RIG_2nd
Beta-prop_HPS5
Beta-prop_IP5PC_F
Beta-prop_Vps41
Beta-prop_VPS8
Beta-prop_RIG_1st
Beta-prop_WDR19_1st
PROPPIN
VPS8_N
Beta-prop_NWD2_C
Csm6_6H
Motif
Other DBs
NCBI-GeneID:
111799328
NCBI-ProteinID:
XP_023538621
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Position
LG01:complement(6938032..6945868)
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AA seq
806 aa
AA seq
DB search
MTTKRAYKLQEFVAHSSTVNCLKIGKKSSRVLVTGGEDFKVNLWAIGKPNAILSLTGHTS
GIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGS
SDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHD
FKSHEGPIQCIDFHPHEFLLATGSADKAVKFWDLETFELIGSAGPETTGVRCLTFNPDGR
TLLCGLHENLKVFSWEPIRCHDSVEVGWSRLSDLTVHEGKLLGCSYNQSCVGVWVVDITR
TEPYAINNVNRLNGRLEPKSSSNLPLQNESNAKAGFGGLSVSQTSEPQLKETKTSGRLSV
SQNLDVVKDPKSLSSTGNGPSTPQRINSNAGPKTNSVSLVTVPSAVVPKRNSVKVTSAFN
NPIFNKSDVIPVIVPRTSSRHEHDDSRKDFDVAGRAVAVPRTHSRHEQDDCRKEFDVSGR
TTPLPRTNSRNEQDDSRKEFDGAGRAVRVPLLSKTTDNRRFPNGRDEVDNPIISVLSESR
GLKANDMGTIADNRNSLHDESRGRKLSRDTSFPEATKGGRIRSHVDWEKRERSNFSRLTY
NASAGRAAALENLPLNNGRDYHRSPEKETVAPASDEHTIENVLQQHDQFVNSMQSRSAKL
QAVYRYWERHDIKGAVSAMEKMADHAVAADVISILTNRIEVVTLDICSCILPLLSGLLES
DLDRFLDISMEMLVKLVRTFGSVIYSTLSATSSVGVNIEAEQRLERCNICFIELEKVKRC
LPALIRKRGSVAKSAQELNLALQEFQ
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgactaccaaacgggcgtacaagctacaagaatttgtggcacattcttccactgtcaat
tgcctgaagattggaaagaagtcatcccgtgttcttgtcacaggtggggaagacttcaaa
gtcaatctctgggctattggtaaacccaacgccatactgagtttgactggccatacaagc
ggaatagactctgtaagctttgactcatcagaagtgttggtagctgcaggggcagctagt
ggaaccatcaagctttgggatttggaggaggctaaaattgttcgaacacttacggggcat
agatcgaattgcatttctgtggattttcatccctttggggaattctttgcttctgggtcc
tcggatacgaatcttaagatatgggatatcagaaagaaagggtgtatccacacatacaaa
ggacacactcgaggagtcaatgcaatcagatttactcccgatggccgttgggttgtatct
ggtggagaagacaacacggtgaagctctgggatttaacggctggaaagttgttgcatgat
ttcaagtcccacgagggtccgattcagtgtatagactttcaccctcatgaatttttgctg
gcaacaggttcagcagataaagcggttaaattttgggacctagaaacctttgagttgatt
ggttcagctggacctgagaccactggtgtccgttgtttaacttttaatcctgatgggagg
acactgctttgcggattgcatgaaaatttgaaggttttctcatgggaaccaataagatgt
catgacagtgtggaagtcggttggtccaggctgtccgatcttactgttcatgaggggaaa
cttcttggctgttcatacaatcagagctgtgttggagtgtgggttgtagacattacgcgc
acagaaccctatgcaattaataatgttaacagactaaatggtcgattagagcctaaatcc
agcagtaatctaccactgcaaaatgaaagcaatgccaaggctggttttggtggattgtca
gtatcacaaacttctgaaccacaactgaaggaaaccaaaacatcgggaaggttgtcagtt
tcacaaaatttagacgttgtcaaggatccaaaatctttgtcatccacaggaaatggacca
agtactcctcagaggatcaattcaaatgctggcccaaagactaattcggttagcttagta
acagtacctagtgcagtggtaccaaagagaaactctgtgaaggttacttcagcattcaac
aacccaatcttcaataaatcagacgtgatacctgtaattgtacccaggacaagttcaagg
cacgagcacgacgattctagaaaggattttgatgttgctggaagagcagtggcagtaccc
aggacacattcaaggcacgagcaggatgattgtagaaaagaatttgatgtttctggaaga
acaacaccactacccaggacaaattcaaggaatgagcaggatgattctagaaaggaattt
gatggtgctggaagagcagttcgagtaccattgctatcgaaaactactgataataggagg
tttccaaatggtagagacgaagtggataacccaattatctccgtcctttctgaatccaga
ggtttgaaggccaatgatatgggcaccattgcagataataggaattccttgcatgatgaa
tctcgagggcgtaaactaagccgggacacatcttttcctgaagcgacaaaaggagggaga
atacgttctcatgtagattgggagaaaagagagagatctaattttagccggttgacatac
aatgcctccgctggaagagcagctgcactggaaaatcttccattaaataacgggagagat
tatcatcgatctcccgagaaagaaacagtagcacctgcaagcgatgagcataccatagaa
aatgttctacaacaacatgatcagtttgtcaactcgatgcaatctcggtcagcaaaatta
caagcggtgtatagatattgggaaaggcatgacatcaaaggggctgtttctgcaatggaa
aaaatggccgatcatgcggttgctgcggatgtaattagtattttgacaaatagaattgaa
gttgtcactctggatatctgcagttgtattctcccacttctttctggcctccttgaaagt
gacttggacaggtttttagacatttctatggaaatgctagtgaagctggtgaggacgttt
ggttcagtgatctattcaacgttatcggcaacatcatctgttggcgtgaacattgaggcg
gagcaaaggttggagcggtgtaatatctgcttcatcgagcttgaaaaagtcaagcgctgc
ctgccagctctcataagaaaaaggggatcggtagcaaagtcagcacaggagttgaatctt
gcactgcaggagtttcaatga
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