Cucurbita pepo subsp. pepo (vegetable marrow): 111800013
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Entry
111800013 CDS
T05351
Name
(RefSeq) E3 ubiquitin-protein ligase Hakai-like
KO
K15685
E3 ubiquitin-protein ligase Hakai [EC:
2.3.2.27
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111800013
04131 Membrane trafficking [BR:
cpep04131
]
111800013
04121 Ubiquitin system [BR:
cpep04121
]
111800013
Enzymes [BR:
cpep01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
111800013
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA processing factors
3' end processing
N6-methyltransferase complex
111800013
Membrane trafficking [BR:
cpep04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
111800013
Ubiquitin system [BR:
cpep04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
111800013
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_3
DUF629
zf-RING_5
KDM6_GATAL
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
111800013
NCBI-ProteinID:
XP_023539354
LinkDB
All DBs
Position
LG08:8813849..8816522
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AA seq
489 aa
AA seq
DB search
MLQIRLSKVPQAEGGAGTVKPLQAETVTVACPDHLILADLPVANGIGAATAASIVKSVGR
RSRRHLGERVHFCVRCDFPIAVYGRLSPCEHVFCLDCARSDSICYLCDDRIQKIQTIKLM
EGIFICAAPHCLKSFLKRTEFESHIQESHADLLKPNAEKEDGNEIEALSAKQSTASESTV
RGPSRPIISPSSNSLAQERDEKFHRQQSRDQPTSGMQQQDSGGHSQGFDRHGPHGHFPPQ
NFDVQGTPHQESSQFSEKQQGILADPPYSQYPPLQSIPPPNYVVPANSNPMLSPPLPFGF
PPFPTEGAQQYYSTPYEVPRQDTAAETGSEQGSLLGFPPGAAGGMNFSATYPQPWNTGQA
GVPYEHAAGGQGMPDTFANAPDSQVNHGFYQGDYRRSPGGLPVNSSVSSMANKSMDLGHS
GNAMDLKNGRGILAPQPPLAQLPLPPPLPLYLSHNKRGKFHSGDTDHDGQGHGWQNDSHS
RDSFGNGQD
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgcttcaaatccggcttagcaaagttccacaggcggaaggtggcgctggaacagtgaag
cccttgcaagctgagactgtgacggtcgcatgccctgaccaccttatccttgctgatctt
cctgtggcaaatggcattggtgcagctactgctgcttccattgttaagtctgttggtcgc
agatctcgccgtcaccttggagaacgagttcatttttgtgtcagatgcgattttcccatt
gcagtttatggtcgcctgagcccatgtgagcatgtgttctgtctcgattgtgcaagaagc
gattctatatgctacctttgtgatgaccgtatccagaagattcaaactataaaattgatg
gaggggatcttcatttgtgcagccccacattgtctcaagtcttttcttaagaggactgaa
tttgaatctcatatacaagagagtcatgctgaccttcttaagccaaatgcagagaaggaa
gatggaaacgaaattgaggctcttagtgccaaacaatctacagcttctgaatccactgtc
cgaggtccatcgagaccaatcatatctccaagttccaattccctggctcaagaacgtgac
gaaaaatttcatcgtcaacaatctagagaccaacccacgtctggcatgcagcaacaagac
agcggtggtcattcacaaggctttgatcgacatggtcctcatggccattttcccccacaa
aactttgacgtacagggtactccacatcaggaatccagtcaattttcagagaaacagcag
ggaattctggccgaccctccatattctcagtaccctcctttgcaatcaattccgccaccg
aattacgtggttccagctaactcaaatccaatgttgagtccccctctaccgttcggtttt
cctccgtttccaactgagggagcacaacaatattacagtacaccctatgaagtgccacga
caagataccgcagcagagactggatccgagcaagggtcactgctaggctttccaccagga
gcagcaggaggaatgaacttctcggcgacttatcctcaaccttggaatactggacaagct
ggcgttccttatgagcatgctgctggaggtcaaggaatgcctgatacttttgctaatgca
cctgattctcaagtaaatcatggattttaccaaggagattatagacgcagccctggaggc
ttgcctgtgaattcttctgtctcgtcaatggccaacaagagcatggacctggggcattct
ggtaatgccatggacttgaagaatggtagaggtatattggcaccacagccgcctctagca
caacttcctctgcctccgccactcccactgtacttgtcgcataataagcgtggcaagttt
cattcaggagatacggatcatgatgggcaaggccatggatggcagaatgatagccatagc
cgagatagctttggaaatggccaagactga
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