Cucurbita pepo subsp. pepo (vegetable marrow): 111800120
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Entry
111800120 CDS
T05351
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03040
Spliceosome
cpep04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111800120
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
111800120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpep03041
]
111800120
04121 Ubiquitin system [BR:
cpep04121
]
111800120
03400 DNA repair and recombination proteins [BR:
cpep03400
]
111800120
Enzymes [BR:
cpep01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
111800120
Spliceosome [BR:
cpep03041
]
Complex B
Other components
Prp19 complex
111800120
Complex C
Prp19-CDC5 complex
111800120
Ubiquitin system [BR:
cpep04121
]
Ubiquitin ligases (E3)
U-box type E3
111800120
DNA repair and recombination proteins [BR:
cpep03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
111800120
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_IFT122_1st
Beta-prop_THOC3
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_Gbeta
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_NOL10_N
DSE1_N
ANAPC4_WD40
Beta-prop_EML
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
Beta-prop_WDR75_1st
Beta-prop_Vps41
Beta-prop_VPS8
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_EIPR1
PROPPIN
Beta-prop_WDR41
Beta-prop_DCAF4
CFAP251_N
Beta-prop_HPS5
Beta-prop_RIG_2nd
Beta-prop_Aladin
Beta-prop_DCAF12
Beta-prop_SPT8
ASA1
zf-Nse
U-box
PAS_11
WD40_like
KNTC1_N
PUMA_CC
Beta-prop_NWD2_C
B-prop_COPA_B_2nd
Motif
Other DBs
NCBI-GeneID:
111800120
NCBI-ProteinID:
XP_023539473
LinkDB
All DBs
Position
LG08
Genome browser
AA seq
521 aa
AA seq
DB search
MNCSISGEIPEEPVVSKNSGLLFEKRLIERHISDYGKCPVTGEPLSIDDIVPIKTGKIVK
PRQAASIPGMLGMFQNEWDVLVLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKER
DEARSLLAQAERQMPLSSTSISSNAAVNVNGKRVNEDEELGPDGKKIRPGISATVISELT
DCNASLSQQRKKRQIPPTLVPVEALESYTQISSHPLHKTNKPGIISLDINHEKDVIATGG
LDTNAVLFGRSSGEILSTLSGHSKKVTSVKFVTRDDLFLTGSADKTVRVWQPSDDGNYNC
RHILKDHTAEVQAVTVHATNNFFVTASLDNTWCFYDLASGLCLTQVAEASGTEGYTSAAF
HPDGLILGTGTSEALVKIWDVKSQKNVARFDGHVGAVTAISFSENGYFLATAAHDGVKLW
DLRKLKNFRTFAPYDSETPTNSVEFDHSGSYLAIAGSDIRVYQVASVKSEWNCIKTIPDL
SGTGKATCLKFGTDAKYLAVGSMDRNLRIFGVPGEDGPMET
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgaactgctctatctccggcgagattccggaagagccagttgtctctaagaattctgga
ttactcttcgagaagcggttaatcgagaggcacatttcagactatgggaaatgccctgtt
acaggcgaacctctttccattgatgacatcgttccaattaaaactggaaagatagtcaag
cccaggcaagctgctagcatccctggaatgctcggaatgttccagaatgaatgggatgtt
ttggtgctgtccaattttgcactggagcaacagttgcatacagccagacaggaacttagt
catgccttatatcagcatgatgcagcctgtcgtgtaattgcaagacttaaaaaggaacgg
gatgaagctaggtcattacttgctcaggcagagaggcagatgcccttgtcatcaacttca
atatcatccaatgctgctgtcaatgttaatggcaaaagagttaatgaggatgaggaattg
ggtcctgatgggaagaaaatacgtccaggaatatcagccactgttatctctgagctcaca
gattgtaatgcttccctttcacaacaaaggaagaagcggcagatacctcctacgttggtt
cctgttgaggctttagagagttacacccagatttctagtcatccacttcataaaacaaac
aaaccagggattatatctcttgacatcaatcatgagaaggatgtcattgcgactggaggg
ctggacacaaatgctgttctttttggtcgatcatctggggagattttatctacactgagt
ggtcattcaaagaaggtaacaagtgtcaaatttgtcacccgagatgatttattcttgact
ggttcagctgacaagactgtccgtgtgtggcaaccatctgatgacgggaactataattgt
agacacattttaaaggatcacacagctgaggtccaagctgttaccgtccatgctaccaac
aacttctttgttactgcctcccttgataacacatggtgtttttatgaccttgcttcagga
ttatgcctaacccaggttgcagaggcttcaggaacggagggctacacatctgctgccttc
catcctgatggtctcatccttggaacgggcacgtcggaggcccttgttaaaatttgggat
gtaaaaagtcagaaaaatgtggctagatttgatggacacgttggggcagtgacagctata
tctttttctgaaaatggttacttccttgcgactgcagctcatgatggagtaaagctgtgg
gaccttcgaaaattgaagaatttccgtacatttgcaccttatgattcagaaactccaaca
aactccgtggaatttgaccatagtggatcttaccttgcaattgctggctcagatataaga
gtttaccaagttgctagtgtgaaatctgaatggaattgcatcaaaactattccagattta
tctggcacaggtaaagcaacctgcctaaaattcggaacggatgcaaaatacttggcagtc
ggatccatggatcgaaatcttcggatttttggtgtgcctggggaagacggcccgatggag
acataa
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