KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111800438
Entry
111800438         CDS       T05351                                 
Name
(RefSeq) uncharacterized protein LOC111800438
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018  RNA degradation
cpep03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111800438
  09123 Folding, sorting and degradation
   03018 RNA degradation
    111800438
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cpep03019]
    111800438
   03041 Spliceosome [BR:cpep03041]
    111800438
Messenger RNA biogenesis [BR:cpep03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     111800438
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     111800438
Spliceosome [BR:cpep03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    111800438
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 111800438
NCBI-ProteinID: XP_023539899
LinkDB
Position
LG01:44788..48968
AA seq 184 aa
MHVSVDVVLVYLTLLWVVVTMENFWWLFAVSFCNLKIREMNRNINQREASSIWFTAQDSP
SYRDALSVFLFLIHLRSQQLRGISTPDRRKPEMSIGGEKGSASTKTPADFLKSIRGHPVV
VKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLA
EGSS
NT seq 555 nt   +upstreamnt  +downstreamnt
atgcatgtgagcgtggatgtggtgctggtctatctgactttattatgggtagtggtaaca
atggaaaatttctggtggctttttgcggtgtcgttttgcaatcttaaaatccgagaaatg
aatagaaacattaatcagagagaggcatcatccatttggtttacagcacaagacagtccc
tcgtaccgtgacgctctctctgtttttctcttcctcatccaccttcgcagccagcagttg
agagggatatccacaccagatagaagaaaaccagagatgagtattggtggtgaaaaaggt
tctgcatcaacaaagacaccagcagactttctcaaatcaattcggggccatcctgtagtc
gtgaaactcaattctggtgttgactatcgaggtattctagcttgtcttgatgggtacatg
aatatagcaatggagcaaactgaagaatacgttaatggacagttgaagaacaaatatggt
gatgcttttatccgtggaaataatgttctatatatcagtacttcaaagaggacgttagcc
gaaggatcgtcatag

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