Cucurbita pepo subsp. pepo (vegetable marrow): 111800438
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Entry
111800438 CDS
T05351
Name
(RefSeq) uncharacterized protein LOC111800438
KO
K12625
U6 snRNA-associated Sm-like protein LSm6
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018
RNA degradation
cpep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111800438
09123 Folding, sorting and degradation
03018 RNA degradation
111800438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111800438
03041 Spliceosome [BR:
cpep03041
]
111800438
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111800438
mRNA degradation factors
5'-3' decay
Lsm complex
111800438
Spliceosome [BR:
cpep03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
111800438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
111800438
NCBI-ProteinID:
XP_023539899
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Position
LG01:44788..48968
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AA seq
184 aa
AA seq
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MHVSVDVVLVYLTLLWVVVTMENFWWLFAVSFCNLKIREMNRNINQREASSIWFTAQDSP
SYRDALSVFLFLIHLRSQQLRGISTPDRRKPEMSIGGEKGSASTKTPADFLKSIRGHPVV
VKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLA
EGSS
NT seq
555 nt
NT seq
+upstream
nt +downstream
nt
atgcatgtgagcgtggatgtggtgctggtctatctgactttattatgggtagtggtaaca
atggaaaatttctggtggctttttgcggtgtcgttttgcaatcttaaaatccgagaaatg
aatagaaacattaatcagagagaggcatcatccatttggtttacagcacaagacagtccc
tcgtaccgtgacgctctctctgtttttctcttcctcatccaccttcgcagccagcagttg
agagggatatccacaccagatagaagaaaaccagagatgagtattggtggtgaaaaaggt
tctgcatcaacaaagacaccagcagactttctcaaatcaattcggggccatcctgtagtc
gtgaaactcaattctggtgttgactatcgaggtattctagcttgtcttgatgggtacatg
aatatagcaatggagcaaactgaagaatacgttaatggacagttgaagaacaaatatggt
gatgcttttatccgtggaaataatgttctatatatcagtacttcaaagaggacgttagcc
gaaggatcgtcatag
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