Cucurbita pepo subsp. pepo (vegetable marrow): 111800770
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Entry
111800770 CDS
T05351
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 57
KO
K14779
ATP-dependent RNA helicase DDX52/ROK1 [EC:
5.6.2.7
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cpep03009
]
111800770
Enzymes [BR:
cpep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111800770
Ribosome biogenesis [BR:
cpep03009
]
Eukaryotic type
90S particles
Helicases
111800770
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GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
UTP25_NTPase-like
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
111800770
NCBI-ProteinID:
XP_023540379
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Position
LG08:8386024..8390398
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AA seq
629 aa
AA seq
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MEKGASFLFAGIHFDKKRFAADFSRFEGKKESDNGIEGLSSIANSDFEVIEDSTPSEKRK
RKRKSAATESVEGFSVFKDSKLTVAASVNEENHPSENDPSEERKEFHRKLERDALFRKKY
NIHVSGNNVPSPLQNFAELSTRYECDPYILHNLVELGFKEPTPIQRQAIPVLLSGRECFA
CAPTGSGKTLAFLCPVLMKLKDPSKEGIRAVILCPTRELASQTTRECKKLAKGKKFSIKL
VTKEVIRHADFSKFSCDVLISTPLRLRLAIRKKKIDLSRVEHLVLDESDKLFELGLLKQI
DTIVKACSNPSIVRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVKQKLVFAGS
EEGKLLALRQSFSESLNPPVLIFVQSKERAKDLYGELAFENIKVNVIHSDLSEIERENVV
YDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFPDSASAYIHRIGRSGRAGRSGEAITF
YTDEDIPFLRNIANVMSASGCEVPSWITELQKKKWKKHRPKRDSISNKPKDDGDTEQPKK
KSKKRRPKRDSIVTKPKGDGDSELQKKKSKKQRPEGDPIRNKPKDEGDTEQQKKKSKKRK
LKRDSISTKPKDDGVSKPQKKKSKKAEEA
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atggagaagggggcttctttcttgttcgccggcattcattttgacaagaagaggttcgcc
gcagatttctctaggttcgagggcaaaaaagaaagtgataatggaatcgaaggtttgagt
tccattgctaatagtgatttcgaagtaattgaggattcaacgccttcggagaagaggaag
aggaagaggaaatcagcggctacggaatcggtggaggggttcagcgtcttcaaggattca
aaactaactgtagctgcttcagtgaatgaggaaaatcatccatctgaaaacgatccttcc
gaagagaggaaggaatttcatcggaaacttgagagagatgcgcttttccggaagaagtat
aacattcatgtctctgggaacaatgttccatcgccacttcagaattttgcagagttgagc
acaagatatgaatgcgacccatacatactgcataatcttgtagaacttgggtttaaagag
ccaacaccaattcaaaggcaggctattccagtcctcttatccggccgtgaatgctttgct
tgtgcccctactggttctggaaaaaccctggcttttctgtgccctgtgcttatgaaactg
aaggatccatcaaaggaaggcatccgtgcagttatactttgtccaacacgagaattagca
tctcagacaacaagggagtgcaaaaaattggctaaagggaaaaaattctctatcaagttg
gttacaaaagaagttattagacatgctgatttctcaaagttctcatgtgatgtactcata
tccactccacttaggttaagacttgctattcggaaaaagaaaattgacctcagtagggtg
gagcaccttgttctggacgaatctgataagttatttgagcttggcttgttaaaacagatc
gacaccattgtaaaagcatgctccaatccttcaatagttcgctcattgtttagtgctact
ttacctgactttgttgaggatcttgctcgctcagtaatgcatgatgctgttcgggttatt
gttggtaggaagaataccgcttctgaaactgtcaagcaaaagttggtttttgccggaagt
gaagaagggaaacttcttgcacttcgtcaaagtttttcagagagtttgaatccaccagta
ctgatctttgtgcaaagcaaggagcgggcaaaagatctttatggcgaactggcatttgag
aatatcaaagtgaatgtcatccattctgacttatcagagatagagcgggaaaatgttgtt
tacgacttcagagctggaaaaacttgggtgttaattgccactgatgtaattgctcgcgga
atggatttcaaaggggttaactgtgtaatcaattatgactttccagattctgcctctgca
tacattcaccggattggccgttctggcagagcagggaggagtggagaagccattacattt
tatacagacgaggacattccatttctgcgaaatattgccaatgtgatgtcagcttcaggc
tgtgaagttccatcttggataactgagctgcagaaaaagaagtggaaaaaacataggccg
aaaagagattcaatctcaaacaaaccaaaggatgatggtgacaccgagcagccgaaaaag
aagtcaaaaaaacgcaggcctaaaagagattcaatcgtgaccaaaccaaagggtgatggt
gactccgagctgcagaaaaagaagtcgaaaaaacagaggcctgaaggagatccaatccga
aacaaaccaaaggacgaaggtgacaccgagcagcagaaaaagaagtcgaaaaaacgcaag
cttaaaagagattcaatctcaaccaaaccaaaggatgatggtgtctccaaaccacagaaa
aagaagtcgaaaaaagcagaggaggcctga
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