Cucurbita pepo subsp. pepo (vegetable marrow): 111800789
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Entry
111800789 CDS
T05351
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111800789
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111800789
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111800789
mRNA degradation factors
5'-3' decay
Decapping complex
111800789
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_TEP1_2nd
Sey1_3HB
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
PEP5_VPS11_N
Pdc1_Ge1
HAM1_C
Motif
Other DBs
NCBI-GeneID:
111800789
NCBI-ProteinID:
XP_023540407
LinkDB
All DBs
Position
LG08:6563043..6575343
Genome browser
AA seq
1410 aa
AA seq
DB search
MASPGNPNPNPANPPFDVQKFFKPTITNPTPTSQNPTLMNSPQFPPPSSSFPPPTGPFSY
PLQNAPFHHPYHSPHHPNQVPYSQDQFSNLHHQRSLSYPTPPLQPSPPPVNMVVPQSNPA
QSSGARIMAMIRAPGSNLDQLPQPSAPMLSSSSGVPESPAPPNVPIMTTIPMMQGVNPGI
SPTGPVRMPSSKLPKGRHLVGDHVVYDVNVRLQGEIQPQLEVTPITKYGSDPQLVLGRQI
AVNKTYICYGLKQGNIRVLNINTALRSLFRGHEKRVTDMAFFAEDVHLLASVDVGGRVYV
WKISEGPDEEAKPQITGKVVISLHMEGEEEIVHPRVCWHCHKQEVLVVGFGKSVLRIDTT
KVGKGESFSAEAPLKFSLDKLIDGVQLVGKHDGEVTELSMCQWMTSRLVSASMDGTIKIW
EDRKASPLLVLRPHDGQPVNAATFLTAPNRPDHIILITAGPLNREVKIWSSASEEGWLLP
SDAESWKCTQTLELKSSAESQVEEAFFNQIVALSQAGLLLLANAKKNAIYAIHLDYGLNP
AMTRMDYIAEFTVTMPILSFTGTSEILDRLTHIVQVYCVQTQAIQQYALDLSQCLPPPLD
NVGLEKADSNVSQDSAGIEGLAALFPSGSKPTETPFTSSTPRVSVLVNGSESACAERYPA
TTTSQDAASIANTECKPVTLSPVASNTDIVSAAAPPVPLSPRLSRNLSGFRSPVGAFEAI
TAVSDHAGDRRGNDYPVNRKMDGLHTNLSEVSSLDDESRNNEEKIAREDLSNVLNPPTVF
KHPTHLITPSEILMAVSSSETPNVIEGKSEVETNIQDVVINDDVEDTELEVKEVGEMKSS
QNGEYCSRGEPQNLSMHNKEKYFCSQASDLGMEVARECCALSSESYIIEEALQVDANIMV
TEVGSQAGEGDRTSAKDVSDKVSDSSISMTPQITTPNTKGKKNKGKNSQGLGLVSPSPSA
FNSNESSTEPCGSSSLPPPEAAMSPFLAIQDTLNQIMNTQKEMQKQMQMTLAVPVTKEGK
RLEAALSRSMEKALKANNDALWARIQEENAKNEKLMRDSTQKITSLVANFVNKDLPAFLE
KALKKEMAAIGPAMVRTLTPAIEKTISSAITDSFQRGVGDKAVNQLEKSVNSKLEATVAR
QIQAQFQTSGKQALQDALKSSFEASVIPAFEMSCKTMFEQVDSTFQKGLVEHSAVAQQHF
DSSHSPLALTLRDSINSASTMAQTLSGELAEGQRKLIALATAGANASSINPLVTQLSNGP
LGAHHEKVEVPLDPTKELSRMLSERKYEEAFTTALQRSDVNIVSWLCSQVDLRAILSNPL
ALSHGVLLSLLQQLACDINNDRSLKIAWMTDVAAAINPTDPMIAMHIRPIFEQVYQILNH
QRSSQTISPVELSGIRVIMHVVNSMLVTCK
NT seq
4233 nt
NT seq
+upstream
nt +downstream
nt
atggcttcccctgggaatccaaacccaaatccagcgaatccgccatttgatgtgcagaaa
ttctttaaacccaccattacaaaccctacgccgacgtcacaaaaccctaccctcatgaat
tcacctcaatttccgcctccttcttcctcttttccgccccctactggccctttctcttac
ccacttcagaacgccccatttcatcacccttaccattctcctcaccatcccaatcaagtt
ccgtactcgcaggaccagttctctaatcttcaccatcagcggtctctttcctaccccact
ccgccgcttcagccttctcctcctcccgtcaatatggttgttcctcagagcaatccggct
cagagctccggtgctcggataatggcgatgattagagcccctggctctaatcttgatcaa
cttcctcagccttctgctccgatgttgtcttcttcatcgggcgttcctgaatctccagca
cctcctaacgttcccatcatgactaccattccaatgatgcagggggtcaatcctggcatt
tctcctactgggccggttcgaatgcccagcagtaagcttcctaaaggacggcatttggtt
ggtgatcatgtggtgtatgatgtgaacgttcggttgcaaggagagatccagccacagctc
gaagtcacgccaataaccaagtatggttcagatcctcagcttgtgttggggcgtcaaatt
gcggtcaacaagacatatatatgctatggtttgaaacaagggaacattcgagttcttaat
atcaatactgcgctaagatcattgtttcgtggccatgagaagagggtcactgacatggca
ttcttcgcagaagatgttcatcttttggctagtgttgatgtaggtgggcgagtttatgtt
tggaagatttctgagggacctgatgaagaagctaaaccacaaatcactgggaaagttgtc
atctcccttcatatggaaggagaggaggaaattgtgcatccacgagtttgctggcattgt
cataaacaggaagttttggtagttggatttgggaagtctgttctgagaattgacacaacc
aaagttgggaagggtgaaagcttttctgccgaagctcctctcaaattttctctcgacaag
ttgattgatggcgttcagcttgttggtaagcatgatggagaagtgactgagttatccatg
tgccagtggatgacttctcgattggtttctgcatctatggatggaacgatcaaaatctgg
gaagatcgcaaggcatcacccttgctggttttgaggccgcatgatggccaaccagttaat
gcggctactttcttgactgctccaaacagacccgatcacattatactcataacagctggg
cctctaaaccgggaagtgaaaatatggtcatctgctagcgaggaaggttggctgcttcct
agcgatgctgaatcatggaaatgcacccagaccctggagttgaagagttcagctgaaagt
caagttgaagaggctttctttaatcaaattgtagcattatctcaagcgggccttctttta
cttgctaatgctaagaagaatgctatatatgcaattcacttggattatggtcttaatcca
gctatgacacggatggattacatagcagagttcactgttacaatgcccattttaagtttt
actggaacaagtgaaatattagaccgtctaacacatattgtccaggtttattgcgtacaa
acacaggctatacaacagtatgctttagatttatctcagtgcttacccccaccgttggac
aatgtggggttggagaaggcagattctaatgtttcacaggattctgctggtattgaagga
ctggctgcattgtttccttctgggagcaaaccaactgagacaccctttaccagttctact
cccagggtttcagtgctagtcaatggctctgaaagtgcctgtgcagaaagatatcctgca
accaccacttctcaagatgcagcgtccattgcaaatacagaatgtaaacctgttacactg
tcgcctgtagctagtaacacagacattgtctctgctgcagcacctcctgttcctttgagc
cctcgcttgtctagaaatctgtctggttttagaagtccagtgggtgcctttgaggctatt
actgcagttagtgatcatgctggtgaccgacgtggtaatgactatccagtcaaccgaaaa
atggatggattacacacaaatttatctgaagtgtcttccttggatgatgagtccagaaac
aatgaggagaaaattgcacgggaagatttgtctaatgtccttaatcctcctactgtgttt
aagcatccgactcatctgattaccccctctgagatactgatggctgtttcttcctctgaa
acccctaatgtcattgaaggtaagagtgaggtagagacaaatatacaggatgtagttatt
aacgatgatgttgaagatactgagcttgaggttaaagaggtaggtgaaatgaaatcttct
cagaatggtgaatattgtagtagaggtgagcctcagaacctttctatgcataacaaggaa
aaatacttctgctctcaagcttcagatcttggtatggaagtggcccgagagtgttgtgca
ctatcatctgaaagttatatcattgaggaagccctacaagttgatgctaatataatggtc
acagaggtaggttcccaagctggtgagggagatagaacatcagccaaagatgtgtctgat
aaggtttctgattcatctatatcaatgactccgcaaatcacaacacctaatacaaagggg
aaaaagaacaaggggaagaactcgcaaggcttaggcttggtttccccatctccaagtgct
ttcaattctaatgaatcttccactgaaccttgtggtagttcaagccttcccccacctgaa
gctgcgatgtctccttttctggccatccaagatacgttgaatcagataatgaacactcag
aaagaaatgcaaaagcaaatgcagatgacgcttgcagttccagtgaccaaagaaggtaaa
cggctggaggcagctcttagtagaagcatggagaaggccttgaaagcgaataatgatgca
ttgtgggctcggattcaggaagaaaatgctaaaaatgagaaattgatgagagatagtaca
caaaagataacaagtctagttgcaaattttgtgaacaaggacttgcctgcctttttagag
aaagctttgaagaaggaaatggctgccattggacctgctatggttcgcacattaacacca
gctattgagaaaacaatttcttctgccatcactgattcattccagagaggagtaggtgat
aaggcagtgaatcaactagagaaatctgttaattcaaaacttgaagctaccgttgctagg
caaattcaagcgcagtttcaaacctctggcaagcaagctctgcaggatgcattaaaatct
agttttgaagcatcggtaattcctgccttcgaaatgtcgtgcaaaaccatgtttgagcaa
gtagattctacttttcagaaaggactggttgaacattcagctgtagctcagcagcacttt
gactcttcacattctccattggcactcactttgagggattctataaattcagcatcaaca
atggcacagaccttgagtggagaattggctgaaggccaaagaaaactgatagcccttgca
actgcaggagcaaatgctagttcaataaatccattggttacccagctaagcaatggacca
ttgggtgctcaccatgagaaggtcgaggttcctttggatcctacaaaagaactgtcaaga
atgttatcagaaaggaaatatgaggaagcattcaccactgctttacagagaagtgatgtg
aacattgtctcttggttatgttctcaggttgatcttagagccattttgtcaaatcccctt
gctttaagtcatggagtactgctgtctctcttgcaacagctagcttgtgatatcaacaac
gatagatccctgaaaattgcatggatgaccgatgtggctgctgccataaaccccacggac
ccgatgatagcgatgcacataagacccatctttgaacaggtgtaccagatattgaaccac
caacggagctcgcaaacgatctctcctgttgagctctctggcattcgtgttatcatgcat
gttgtcaactccatgctggtaacttgtaaatga
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